KEGG   Phaeodactylum tricornutum: PHATRDRAFT_25420
Entry
PHATRDRAFT_25420  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03020  RNA polymerase
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHATRDRAFT_25420
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATRDRAFT_25420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_25420
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATRDRAFT_25420
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     PHATRDRAFT_25420
  RNA polymerase III system
   RNA polymerase III
     PHATRDRAFT_25420
  RNA polymerase I system
   RNA polymerase I
     PHATRDRAFT_25420
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PHATRDRAFT_25420
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N ASRT
Other DBs
NCBI-GeneID: 7197349
NCBI-ProteinID: XP_002178061
JGI: 25420
UniProt: B7FSY0
LinkDB
Position
2:complement(1057687..1058512)
AA seq 228 aa
MTDVIDGTGDVSPALALAAPTIQGGLTPEAARLFRVYRTIANMLDKRGYMVPKTLREITP
SAFKERFGEYPSRENLTILVEKADDDTNQLFIFFPEDEKVGVKPIKVYTDRMRAESVSNA
IIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKR
YRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYRICM
NT seq 687 nt   +upstreamnt  +downstreamnt
atgaccgatgtaattgatggaacaggagacgtcagcccagcgctggcgcttgcagcccca
acgatccaaggtggtctcactccggaggctgcaagattgttccgggtatatcgcacgatt
gcaaacatgcttgacaagcgtggttatatggtaccgaagacacttcgggagatcacccca
tcggcatttaaagagcgatttggcgaatatccaagtagagagaatctcacaattctggtc
gaaaaagccgacgatgacacaaaccagcttttcatattctttcctgaagacgaaaaggta
ggagtgaagccaataaaggtgtacactgatcgtatgcgtgcggagtctgtgtcgaacgcc
attataattcttcgggtagatataaccccatttgcgaaacaagcggttcaagagatgagt
gactcgttccgtatcgagcactttaaggaatcggagctgctggttgatatcacgaagcat
cagcttgttcctgtgcatcaagttttgactcctaatgagaagaatgaattgctgaaacga
taccgactgaaggacagtcagcttcctagaattcaatccaacgacccagtcgcgcgctac
tacggaatgagacggggccaagtggtaaaaattattcgaccgtcggaaactgccggtcgc
tacgtcacatatagaatctgcatgtag

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