Phaeodactylum tricornutum: PHATRDRAFT_30519
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Entry
PHATRDRAFT_30519 CDS
T01075
Symbol
PYC1
Name
(RefSeq) precursor of carboxylase pyruvate carboxylase
KO
K01958
pyruvate carboxylase [EC:
6.4.1.1
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti00020
Citrate cycle (TCA cycle)
pti00620
Pyruvate metabolism
pti01100
Metabolic pathways
pti01200
Carbon metabolism
pti01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
PHATRDRAFT_30519 (PYC1)
00620 Pyruvate metabolism
PHATRDRAFT_30519 (PYC1)
Enzymes [BR:
pti01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.1 pyruvate carboxylase
PHATRDRAFT_30519 (PYC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
PYC_OADA
Biotin_carb_N
Biotin_carb_C
HMGL-like
Biotin_lipoyl
Biotin_lipoyl_2
HlyD_3
Dala_Dala_lig_C
ATP-grasp
HlyD_D23
ATP-grasp_3
ATP-grasp_4
DUF2118
RnfC_N
NQRA
Aldolase_II
GCV_H
Motif
Other DBs
NCBI-GeneID:
7198165
NCBI-ProteinID:
XP_002184364
JGI:
30519
UniProt:
B7GBG1
LinkDB
All DBs
Position
23:404997..409565
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AA seq
1252 aa
AA seq
DB search
MYRTRVLRRATATTRTRGAGSGSLSPSRFRLSRWSTTFAAPPLACGLLSCAAGLSQQCHQ
PIGRGLHTFHTPDEQLPKSGGPVGVDTPPFTKLLAANRGEIATRINRAAAELGISTAGIY
SYEDRFTQHRYKCDQAFELDTSKSPVAQYLDIDKIVDICVKNKVQAVHPGYGFLSENETF
AKKLDNAGIIFVGPTVQNLQAFGDKTAARNMAIACNVPVVAGSHDAFATAKEASAWINDP
ANQCDYPVIVKALMGGGGRGIRIVPTEKDLNAMFQQASNEAASAFGDGRCFVEKYVEKPR
HVEVQCLGDGTGNVIHLWDRDCSVQRRHQKVVELAPAEGLSEDGRNQILNDAVRLLQNAN
YRNAGTVEFLVDKNGKHYFMEVNPRVQVEHTVTEEITGVDIVQSQILIASGKTLPELNLT
QESIPSPMGVAMQCRVTTEDPAQDFRPDTGTINVFRMPAGMGIRLDDGPGFPGARITPHY
DSLLVKITAKARNRKEAAAKLIRALKEFRVRGVKTNKSFLLNVLKHPDFLEGVVDTGFIA
ANPHLLAPLREQDRAQKLLYYIANVVVNGTPKELGATGAPPSTVDPIIPVVEPNSGQQKK
PSLKKIFDADGPDAFAKAVRNNKGLLITDTTWRDAHQSLLATRLRTKDMLNIAPATTVAL
ANAYSLECWGGATFDVSLRFLRECPWERLSALREAVPDIPFQMLLRGANAVGYTSYPDNV
VYEFCQMAKDTGMDVFRIFDSVNYIENMKLGIDAVGAAGGIVEAAVCYTGDVSNPNRGMY
NLEYYLGFVRQLHGLGIHVLAIKDMAGLLKPEAGTMLVNAIRQEFPDLPIHVHTHDTAGT
GVASMLACAKAGADAVDAAADAMSGTTSQPSLGALVASTQGTQWDTGLDLNQVQAVNDYW
EEARGLYAPFESGQKTGSSDVYEHEMPGGQYTNLLFQSSQLGLTGQWSKVKKAYAAANRL
LGDIIKVTPSSKVTGDLAQFLVANDLTEKEVIEKAETLSFPKSVVEYFQGYLGIPPFGFP
EPLRTKVLKGQTIEGYEGLTCFEGRPGADLKPMDMEAVRSKLEEKWGGQADHGVRNVDIL
SHAMYPAVFDEYKEFKNVFGKLDFLDTRTFLTGMRVNQELRVEIEPGKQLVIKLDSVSEP
DKDGLVTLQFELNGTLRTVQIQDKSVDSEKAVRPKAMAAVAGSVGAPMPGVVVETKVKKG
DVVEQGDPLLSLSAMKMETTVSAPVSGTVVFFEVTAGDQVEAGDLLVEIEDE
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgaactcgggttctccgtcgtgccactgcgacgactcgtactcgtggagccggt
agcggaagtctttccccgagtcgttttcggctgagtcgttggtcaactacgtttgcggcc
ccaccgttggcctgcggacttctctcttgcgcggcaggtctttcacagcagtgccaccaa
ccaattgggcggggtttacatacgttccatactcccgacgagcagcttcccaagagtgga
ggacccgtgggagtggatacaccgccctttaccaagttactcgctgccaatcgtggcgaa
attgcgacccgtatcaaccgcgccgcggcggagctagggatttcgaccgctggcatttat
tcttacgaagatcgcttcacccagcaccgctacaaatgtgaccaagcctttgaactcgat
accagcaagtctccagtcgctcagtacctagatattgacaagattgtcgatatttgcgtc
aagaacaaggtccaagcggtccatcctgggtatggattcttgagtgaaaacgagaccttt
gccaagaaactggacaatgccggtatcatttttgttgggccgacggtccagaacctgcaa
gcctttggtgacaagactgccgcccgcaatatggccattgcctgcaacgtcccggtcgtg
gcgggctcgcacgacgcctttgcgaccgccaaggaagcttccgcctggatcaacgatccc
gccaaccaatgcgactatcccgtcattgtcaaggcactcatgggcggtggtggccgtggc
atccgtattgtgcccacggagaaagatctcaacgccatgtttcagcaagcctccaacgag
gccgccagtgcgttcggcgatggtcgctgttttgtcgaaaagtatgtcgaaaaaccgcgg
catgtggaagttcagtgtctcggagatggtacgggtaacgtcattcatttgtgggatcgt
gattgctctgtacagcgccggcatcaaaaggtcgttgaactggcacccgccgagggtttg
tcggaagacggacgtaaccaaattttgaacgatgccgtgcgtttgttgcagaatgccaac
tatcgcaacgctgggacggtggaatttttggtcgacaagaacggcaagcattattttatg
gaggtaaacccacgtgtacaggtggaacacacagtgacagaggaaattactggcgttgat
attgtacagtctcaaatcttgatagcctcgggtaagacgcttcctgagcttaacttgacg
caagaaagcattccatcgcccatgggtgtcgccatgcaatgtcgtgtaacgactgaggat
cctgcgcaggactttcgccccgatacaggaaccatcaatgtttttcgtatgccagccggt
atgggtattcgcttagacgatggtcccggctttcccggtgcccgaattacacctcactac
gattcgttgctcgtcaaaatcactgccaaggctcgcaaccgcaaggaagctgctgccaaa
ttgatccgggcccttaaagaattccgagttcgtggagtgaagacgaataagagttttttg
ttgaatgttttgaaacatccagatttcttggaaggagtagttgacacgggatttattgct
gcaaacccgcatttgctggcgccattgcgggagcaggaccgcgctcaaaagctgttgtat
tacatcgcaaatgttgttgtgaatggtacgccgaaggagcttggtgccactggcgcgcca
ccatcaacggtagatcctatcatacccgtagtcgaaccgaattctggtcagcaaaagaaa
ccatctctgaaaaagatttttgatgcagatggacctgatgcttttgccaaggccgttcga
aataacaagggattgctaattacggatactacctggcgtgacgcacaccaatccctttta
gctacccgcttgcgcacgaaagatatgctcaatattgcccctgcaacgacggttgctcta
gcgaacgcgtattcgctggaatgctggggtggagccacattcgatgtttcgttacgcttc
ttacgcgagtgtccgtgggaacgattgtcagcgttgcgcgaggctgtgccagacattccg
tttcaaatgcttcttcgcggcgccaacgctgtaggatacacaagctatccagacaatgtg
gtatatgaattctgccagatggcgaaagacactggcatggacgtgtttcgtatatttgat
tctgtaaactacattgagaacatgaagcttggtattgatgctgttggagctgctggcggt
atcgtcgaggcagccgtatgctacactggtgatgtctccaatccgaatcgcggcatgtac
aatctggaatactaccttggctttgtccgtcagctccatgggctaggcattcatgtttta
gccatcaaagacatggctggcttgctcaagcctgaagcaggaacaatgctggtaaacgcg
attcgacaagagtttccagatttgccgatccatgttcatacacacgatactgctggaaca
ggggtcgcgtcaatgttggcttgcgccaaggctggagccgatgctgtcgacgccgcagcg
gacgccatgtctggaaccacttctcagccttctcttggagctctcgttgcgagtacgcag
ggaacccagtgggacactggattggatctgaatcaagttcaagctgtaaatgactactgg
gaagaagcccggggattgtacgctccgttcgaatctggtcagaaaactggttcaagcgat
gtttacgaacacgaaatgcccggtggacagtatactaaccttttgtttcagagctcgcag
cttgggctaacagggcagtggtcaaaagtgaagaaagcctatgctgctgcaaatcgactg
ttgggcgacattattaaggtgacaccgtcttctaaagtaaccggagatctggctcagttt
cttgtcgccaatgacctgaccgagaaagaggtaattgaaaaggctgaaactctttcgttc
cccaaatctgttgttgagtacttccagggttacctgggtattccaccatttggatttccg
gaaccattgcgcacgaaagttctcaaggggcagacaatcgaaggctatgaaggtttgact
tgctttgagggacgtcctggtgcggacttgaaacccatggacatggaagctgtgcggtca
aaactcgaggagaaatggggaggccaggctgaccatggtgtacgtaacgttgacatactc
agtcatgctatgtatcccgcagtgtttgacgagtacaaagagtttaagaatgtattcggc
aagctcgactttctggatacccgtacgttcttgacaggaatgcgggttaatcaggaacta
cgagtagaaattgaaccaggcaagcaactagtgatcaaactggactcggtctcggaaccg
gacaaggacggcttggtaacgttacaattcgagctgaacggtaccctccgtaccgtccaa
atccaggacaagtcggtggactctgaaaaggccgtccggccgaaagcgatggccgcagtt
gccggtagcgttggagctcctatgccgggagttgttgtggaaaccaaagtgaagaaaggc
gatgtcgtcgagcaaggagatccattactcagtttgagcgccatgaaaatggagaccacg
gtgtcggccccagtgagtggcactgtcgtctttttcgaagtcaccgctggagaccaagtc
gaagccggagacctgttggtcgaaattgaggacgagtaa
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