KEGG   Phaeodactylum tricornutum: PHATRDRAFT_9235
Entry
PHATRDRAFT_9235   CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHATRDRAFT_9235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_9235
Enzymes [BR:pti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PHATRDRAFT_9235
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     PHATRDRAFT_9235
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpa2_4 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-GeneID: 7196235
NCBI-ProteinID: XP_002177384
JGI: 9235
UniProt: B7FQD9
LinkDB
Position
1:complement(1843347..1847100)
AA seq 1147 aa
QRLRTLTAPHVDSFDYFWEQGLARGVQDIEPAEFNIVDPQKLRDNPIAKPAKAPGERSQK
LLPRECRERKLVYAGEISATFCYRMIQRRNGVDFPSRPVRLNKTFGDMPIMVMSKGCHLE
GTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQRSSYKNRGNTYTDLG
VAMRCARHNGDMSAITNTVHYLTTGGANLKFVAKKQEFLIPAILILRALSGSESQTELYE
RIVQGDQSNTFLVARAGLLLQDARARFGSLNTPDECLAFIGTRFRRLSQKAETTSDVEIG
HHIIRRFVLIHLPTYRDKLECLLLMLRKLYAFAAGDCGVDNADSLQNQEILLPGHLMCTF
IKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMVDRHAGKASGGIGKKVQHFL
STGNIVSTSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFMEMKTTAVRKLLPDQW
GFLCPVHTPDGGPCGLLSHLALKSKVMAYPSRLDAKGMIDLDDLLLSLGVTPCGAGSRNG
DGRIGSTHLHLPVSIDGRIVGGASPSVLKIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNP
GAPYPGLYLFTCAARLVRPVLNRASGHTEFIGPLEQGYMDIACLDEDIREGITTHQELDP
TNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSLPYRPDNKLYRLQTPQAPVVQ
TSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDVSLQE
EAKMTGASSSGEDVRMKFSNKVKFDKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGM
DRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPRNPVLGDKFSSRHGQKGVLSI
LWPQEDMPFSESGISPDVIINPHAFPSRMTIGMMVESMAGKSGALHGNFQNATPFSFHES
GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVVYYQRLRHMVLDKYQVR
ATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDRLLNCSDKHVAYACCRC
GDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVLPYVYRYLVNELAAMNV
KMRLAIK
NT seq 3444 nt   +upstreamnt  +downstreamnt
cagcgtttacgaacattgactgccccgcacgtggacagtttcgactacttctgggagcag
ggattggcccggggggtccaagatatcgaaccggcggaattcaatattgtcgatccacag
aaattacgcgacaatccgattgccaaaccggccaaagcccccggggaacggtctcagaaa
ctcttgccacgtgaatgccgggaacggaagctcgtgtatgccggagagatctcggcaacc
ttttgctaccgcatgatacagcgtcgaaatggcgtagatttcccctcccgacccgtccga
ttgaacaaaacctttggagacatgccaatcatggtcatgagtaaaggttgtcatttggaa
ggaaccactccgaaacagctggtgaaactgaaagaagaggataatgagttcggtggctac
tttatcgttggtggcatcgagcgttgcgtccgcttgcttcaagtcccccgccggaatcat
gccacggctattcaacgctccagctacaaaaaccggggcaatacgtatacagatttgggc
gtggccatgcgatgcgctcgtcataacggggacatgagcgctattaccaacacggtccac
tacttgacgaccggtggcgccaacctcaagtttgttgctaaaaagcaagagtttctcatt
cccgctattctcattctgcgtgctctgagcggatccgagtcgcaaacggaattgtacgag
cggatcgtgcaaggtgatcaatcgaatacgttcttggtcgcccgggccggactgctatta
caagacgcaagggcgcgttttggatctttgaacactccggatgagtgcctggcattcatt
ggcacaagattccgtcgactcagtcaaaaagccgaaacaactagcgacgttgagattggt
catcacattattcggcgcttcgtcttgattcatctaccgacgtatagagacaaactagag
tgtttgttgttgatgcttcgcaaactttatgcttttgcggctggagattgtggtgtggac
aacgcggattctctgcagaaccaagaaattctgcttcccggtcatttgatgtgtaccttc
ataaaagaaaagtttgaggaatttttgtcaagcttgcgtctcgctctcttgagtgatctc
cggaaggacttcgcgcgaacttcagcaaagctaactgacgccaagtactgggggaaaatg
gtggatcgacacgctggtaaggcgtccggagggatcgggaagaaagtgcagcacttcctg
tcgactggaaacatcgtgtcgacttctggtttggatttaatgcaagtttcgggctacact
attgtagccgaaagattgaattttttacgatattgtgcgcactttcgctccgtgcatcgt
gggcagttttttatggaaatgaagacaacagcggttcggaaactgttgccagatcagtgg
ggatttctgtgcccagtgcacactcctgatggcgggccttgcggtctacttagtcacttg
gctctgaaaagcaaggttatggcatatccctcccggctggatgccaagggtatgatcgat
ctcgatgaccttctgctgtctctaggagtaacgccgtgtggagcaggtagccgaaatgga
gacggacgaattggatcgactcacttacatttaccggtgagcatcgatgggcgcatcgta
ggtggagctagtccctctgttctcaagattatcgctgctcatttgagaaagctgaaggtc
gacaatcctccagttgtcccaccaactcttgaagttggtcttgttcccccgggaaatccc
ggtgctccgtatcctgggctttatctattcacgtgtgcggctcgacttgtgcgtcctgtt
ttgaaccgtgcttccggtcacacggagttcataggtccattggagcaaggttatatggat
attgcttgccttgacgaagatattcgagaaggaatcactacacaccaagaactcgaccct
accaatatgctgagtttgattgccaatctgacgcctttttcagatcaaaaccaatcgcca
cgaaacatgtatcagtgtcaaatggggaagcaaacgatgggaactcccgcccactctctc
ccatacagaccagacaacaaattatatcggcttcaaacacctcaagctccagtggttcag
actagtattcatggagaatataaaatggatgaatatccgaacgggacaaatgcggtggtt
gccgttttgagttatactggctttgatatggaggatagcgttattctgaacaagtcttcg
gtggaacgaggatttgcacatgcttccgtttacaaaacgattgatgtaagcctccaagag
gaggccaaaatgacaggagcgtcgtcatcaggagaagatgtgcgcatgaagttttcgaat
aaagtgaaattcgataaagtcatgtatccaagtttacaagacgacggtttaccacaggtt
ggcgattgtatgactgagggtgatcctctgtattgtgtcgtcgattccatcagtggaatg
gatagagctgcaaagcacaaagagcgtgaaatagcgtacgtccagtccgttcgagctctt
ggcaatgacagtgggaaaggagctgacaacaaggtgtcaattacgctgcgctttccacga
aatccagttttgggagacaaattttcgagtcgacatggtcaaaagggagttttgagtatt
ttatggcctcaagaggacatgccttttagtgaatctggtatctcccctgacgtgattatc
aaccctcatgcattcccaagccgaatgaccattggaatgatggtggagagcatggcagga
aaaagtggggctttgcatggaaactttcagaatgctactccattttcgtttcatgaatca
ggggataaagtgtcagtcgattatttcggtgaacaactacaggccgcagggtataattac
tacggaagcgagcctctgtacagtggggtttccggctgtgtgatgcaagctgatctctat
attggtgtggtatattaccagcggcttcgtcacatggttttagacaaatatcaggtccga
gccaccgggccaacaaacgaacttacaagacagcccataaaaggacgtaagaaaggtggt
ggtatccggcttggcgaaatggagcgcgacagccttcttagccacggaacagccttcctg
ctccaagaccgattgctcaattgcagcgacaaacatgttgcatacgcgtgttgccggtgc
ggtgacttgcttatgtcggccacagagaggagcactgttcagacaactgggcagagcgcg
aacgaagccatcaataaaccgaagatccggctttattgtcgaagcgccggatctgtcgag
ccgattgtactcccgtacgtatatcgatatctcgtcaacgagctcgctgccatgaatgta
aagatgcgactcgcaatcaaatag

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