Phaeodactylum tricornutum: PHATRDRAFT_9235
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Entry
PHATRDRAFT_9235 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHATRDRAFT_9235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_9235
Enzymes [BR:
pti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PHATRDRAFT_9235
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
PHATRDRAFT_9235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
7196235
NCBI-ProteinID:
XP_002177384
JGI:
9235
UniProt:
B7FQD9
LinkDB
All DBs
Position
1:complement(1843347..1847100)
Genome browser
AA seq
1147 aa
AA seq
DB search
QRLRTLTAPHVDSFDYFWEQGLARGVQDIEPAEFNIVDPQKLRDNPIAKPAKAPGERSQK
LLPRECRERKLVYAGEISATFCYRMIQRRNGVDFPSRPVRLNKTFGDMPIMVMSKGCHLE
GTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQRSSYKNRGNTYTDLG
VAMRCARHNGDMSAITNTVHYLTTGGANLKFVAKKQEFLIPAILILRALSGSESQTELYE
RIVQGDQSNTFLVARAGLLLQDARARFGSLNTPDECLAFIGTRFRRLSQKAETTSDVEIG
HHIIRRFVLIHLPTYRDKLECLLLMLRKLYAFAAGDCGVDNADSLQNQEILLPGHLMCTF
IKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMVDRHAGKASGGIGKKVQHFL
STGNIVSTSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFMEMKTTAVRKLLPDQW
GFLCPVHTPDGGPCGLLSHLALKSKVMAYPSRLDAKGMIDLDDLLLSLGVTPCGAGSRNG
DGRIGSTHLHLPVSIDGRIVGGASPSVLKIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNP
GAPYPGLYLFTCAARLVRPVLNRASGHTEFIGPLEQGYMDIACLDEDIREGITTHQELDP
TNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSLPYRPDNKLYRLQTPQAPVVQ
TSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDVSLQE
EAKMTGASSSGEDVRMKFSNKVKFDKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGM
DRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPRNPVLGDKFSSRHGQKGVLSI
LWPQEDMPFSESGISPDVIINPHAFPSRMTIGMMVESMAGKSGALHGNFQNATPFSFHES
GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVVYYQRLRHMVLDKYQVR
ATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDRLLNCSDKHVAYACCRC
GDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVLPYVYRYLVNELAAMNV
KMRLAIK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
cagcgtttacgaacattgactgccccgcacgtggacagtttcgactacttctgggagcag
ggattggcccggggggtccaagatatcgaaccggcggaattcaatattgtcgatccacag
aaattacgcgacaatccgattgccaaaccggccaaagcccccggggaacggtctcagaaa
ctcttgccacgtgaatgccgggaacggaagctcgtgtatgccggagagatctcggcaacc
ttttgctaccgcatgatacagcgtcgaaatggcgtagatttcccctcccgacccgtccga
ttgaacaaaacctttggagacatgccaatcatggtcatgagtaaaggttgtcatttggaa
ggaaccactccgaaacagctggtgaaactgaaagaagaggataatgagttcggtggctac
tttatcgttggtggcatcgagcgttgcgtccgcttgcttcaagtcccccgccggaatcat
gccacggctattcaacgctccagctacaaaaaccggggcaatacgtatacagatttgggc
gtggccatgcgatgcgctcgtcataacggggacatgagcgctattaccaacacggtccac
tacttgacgaccggtggcgccaacctcaagtttgttgctaaaaagcaagagtttctcatt
cccgctattctcattctgcgtgctctgagcggatccgagtcgcaaacggaattgtacgag
cggatcgtgcaaggtgatcaatcgaatacgttcttggtcgcccgggccggactgctatta
caagacgcaagggcgcgttttggatctttgaacactccggatgagtgcctggcattcatt
ggcacaagattccgtcgactcagtcaaaaagccgaaacaactagcgacgttgagattggt
catcacattattcggcgcttcgtcttgattcatctaccgacgtatagagacaaactagag
tgtttgttgttgatgcttcgcaaactttatgcttttgcggctggagattgtggtgtggac
aacgcggattctctgcagaaccaagaaattctgcttcccggtcatttgatgtgtaccttc
ataaaagaaaagtttgaggaatttttgtcaagcttgcgtctcgctctcttgagtgatctc
cggaaggacttcgcgcgaacttcagcaaagctaactgacgccaagtactgggggaaaatg
gtggatcgacacgctggtaaggcgtccggagggatcgggaagaaagtgcagcacttcctg
tcgactggaaacatcgtgtcgacttctggtttggatttaatgcaagtttcgggctacact
attgtagccgaaagattgaattttttacgatattgtgcgcactttcgctccgtgcatcgt
gggcagttttttatggaaatgaagacaacagcggttcggaaactgttgccagatcagtgg
ggatttctgtgcccagtgcacactcctgatggcgggccttgcggtctacttagtcacttg
gctctgaaaagcaaggttatggcatatccctcccggctggatgccaagggtatgatcgat
ctcgatgaccttctgctgtctctaggagtaacgccgtgtggagcaggtagccgaaatgga
gacggacgaattggatcgactcacttacatttaccggtgagcatcgatgggcgcatcgta
ggtggagctagtccctctgttctcaagattatcgctgctcatttgagaaagctgaaggtc
gacaatcctccagttgtcccaccaactcttgaagttggtcttgttcccccgggaaatccc
ggtgctccgtatcctgggctttatctattcacgtgtgcggctcgacttgtgcgtcctgtt
ttgaaccgtgcttccggtcacacggagttcataggtccattggagcaaggttatatggat
attgcttgccttgacgaagatattcgagaaggaatcactacacaccaagaactcgaccct
accaatatgctgagtttgattgccaatctgacgcctttttcagatcaaaaccaatcgcca
cgaaacatgtatcagtgtcaaatggggaagcaaacgatgggaactcccgcccactctctc
ccatacagaccagacaacaaattatatcggcttcaaacacctcaagctccagtggttcag
actagtattcatggagaatataaaatggatgaatatccgaacgggacaaatgcggtggtt
gccgttttgagttatactggctttgatatggaggatagcgttattctgaacaagtcttcg
gtggaacgaggatttgcacatgcttccgtttacaaaacgattgatgtaagcctccaagag
gaggccaaaatgacaggagcgtcgtcatcaggagaagatgtgcgcatgaagttttcgaat
aaagtgaaattcgataaagtcatgtatccaagtttacaagacgacggtttaccacaggtt
ggcgattgtatgactgagggtgatcctctgtattgtgtcgtcgattccatcagtggaatg
gatagagctgcaaagcacaaagagcgtgaaatagcgtacgtccagtccgttcgagctctt
ggcaatgacagtgggaaaggagctgacaacaaggtgtcaattacgctgcgctttccacga
aatccagttttgggagacaaattttcgagtcgacatggtcaaaagggagttttgagtatt
ttatggcctcaagaggacatgccttttagtgaatctggtatctcccctgacgtgattatc
aaccctcatgcattcccaagccgaatgaccattggaatgatggtggagagcatggcagga
aaaagtggggctttgcatggaaactttcagaatgctactccattttcgtttcatgaatca
ggggataaagtgtcagtcgattatttcggtgaacaactacaggccgcagggtataattac
tacggaagcgagcctctgtacagtggggtttccggctgtgtgatgcaagctgatctctat
attggtgtggtatattaccagcggcttcgtcacatggttttagacaaatatcaggtccga
gccaccgggccaacaaacgaacttacaagacagcccataaaaggacgtaagaaaggtggt
ggtatccggcttggcgaaatggagcgcgacagccttcttagccacggaacagccttcctg
ctccaagaccgattgctcaattgcagcgacaaacatgttgcatacgcgtgttgccggtgc
ggtgacttgcttatgtcggccacagagaggagcactgttcagacaactgggcagagcgcg
aacgaagccatcaataaaccgaagatccggctttattgtcgaagcgccggatctgtcgag
ccgattgtactcccgtacgtatatcgatatctcgtcaacgagctcgctgccatgaatgta
aagatgcgactcgcaatcaaatag
DBGET
integrated database retrieval system