Planktomarina temperata: RCA23_c01440
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Entry
RCA23_c01440 CDS
T03229
Symbol
rafA
Name
(GenBank) alpha-galactosidase RafA
KO
K07407
alpha-galactosidase [EC:
3.2.1.22
]
Organism
ptp
Planktomarina temperata
Pathway
ptp00052
Galactose metabolism
ptp00561
Glycerolipid metabolism
ptp00600
Sphingolipid metabolism
ptp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
RCA23_c01440 (rafA)
09103 Lipid metabolism
00561 Glycerolipid metabolism
RCA23_c01440 (rafA)
00600 Sphingolipid metabolism
RCA23_c01440 (rafA)
Enzymes [BR:
ptp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.22 alpha-galactosidase
RCA23_c01440 (rafA)
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Gene cluster
GFIT
Motif
Pfam:
Melibiase
Glyco_hydro_36N
Glyco_hydro_36C
Melibiase_2
Motif
Other DBs
NCBI-ProteinID:
AII85711
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All DBs
Position
complement(151929..154013)
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AA seq
694 aa
AA seq
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MSQFWRLDGPLQTFILAAQQERLPQVIYWGPPLPTSDDCATLAAAHTMDVTGGMLDANPE
LSICPESSQSFPGQPGLMCRDAQGRVLRPKFRFVKDLAKEHSLCLTYADKDLGLTYEAHF
ELTASSNILTCWSRLEATQPLMLHWLAAPVFPAPQLSDSMMSFSGRWIGEFQTHSIPWRP
GIHKRESRTGRSGHEHFPGLILPEIGARNTIGRAYGFHYGWSGGHQMIAEELPDGRRQIQ
FGHACDSHNGPAQSFETAKLYAVFSDRGINGCGTGFQRHLRDHILTFPKASLPRPVHYNC
WEAIYFDHDLSSLKDIATRAKDLGAERFVLDDGWFGRRDDDNSSLGDWQIDPRKYPSGLD
PLIDHITSLGLQFGLWVEPEMVNPDSNLYRAHPDWILGQKDQLLGRQQLVLDMARDEVIA
YLYDCISAILETYDIGYLKWDHNRTLPLSDVTQTEGTYALLARLRAAFPHVEIESCASGG
GRIDFGILQHCQRVWLSDSNDALERSRIQHGAALFLPALVTGSHVGPRLCHTSGRVFDMR
YRAWVAAQRHMGFEMDPRELDAQEAQILTEVTQWYKDNRDWLATADILRLDTADPSVLAE
MQRAADGSRFVVFSNQLDSAQHILPRPLCLTELDPKAQYRLHLRNRNEATSLSRGAPLLK
SQDLQASGAWLMAHGVQLPYAMPGSIWVVEGRKL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagttttggcgcttagatgggccccttcaaaccttcattcttgcggcgcagcag
gagcggctgccgcaggtcatctattgggggccacccctgcccacatccgacgattgcgcc
acgctcgccgctgcccatacaatggatgtcacgggcggtatgctcgatgcgaacccagag
ctgtccatctgccccgaatccagccaatcctttcccggtcaaccgggtctcatgtgccgc
gatgcgcaggggcgcgtgctgcgcccaaagtttcgctttgtgaaggacctggcgaaagag
cacagcctatgtctcacctatgcagacaaagatttgggcctgacctatgaggcgcatttt
gaactgacagccagctcaaacatactcacctgctggagccgcttggaggcgacgcagccg
ctcatgctgcattggctggccgccccagtgtttcccgcgccacagttaagtgattccatg
atgagcttttccgggcgttggatcggcgaatttcaaacccactcaatcccttggcgcccc
ggcattcacaagcgcgagagccgcacaggccgcagcgggcatgaacatttccccggcctc
atcctccccgagattggcgcgcgcaacacaatcggccgggcctatgggtttcactatggc
tggtcaggtgggcatcaaatgatcgccgaagagctgcccgatgggcgccggcaaatccaa
tttggtcatgcctgcgacagccacaacggcccggcccagagttttgaaactgcgaaactc
tatgctgtgttttccgacagggggatcaatggctgtgggacaggttttcaaaggcacctg
cgcgatcatatcctaaccttcccgaaagcctccctgccgcgtccggtacattataattgc
tgggaagccatttattttgaccatgacttaagcagcctaaaggacatcgcaacccgcgcc
aaagatctgggtgccgagcggtttgttctcgatgacggctggtttggtcgccgcgatgat
gacaactcctcccttggcgattggcagattgatccgcgcaaatatccgagcggtttggat
ccgctgatcgatcatatcacatctctgggcctgcaattcggtctttgggttgagccggaa
atggtgaaccccgacagcaacctctatcgcgcccatcccgattggattctggggcaaaaa
gaccaactgcttgggcgccaacaactggtgctcgacatggcgcgcgatgaggtcatagcc
tatctgtatgactgcatctccgccatacttgagacctatgacattggctatttgaaatgg
gatcacaaccggaccttgcccctgtccgatgtgacccaaaccgagggcacctatgcgctt
ttggcccgcttgcgcgccgcttttccccatgtggagattgaaagctgcgcctctggcggc
gggcgcattgattttggcatattgcagcactgccagcgggtctggctgtcagacagcaat
gacgcgctcgaacgcagccgcattcaacatggcgcagcgttgtttttgcccgccctcgta
accggcagccacgttggtccacgcctgtgtcacacctcgggccgcgtgtttgacatgcga
taccgcgcttgggtcgccgcacaaaggcatatgggctttgaaatggacccgcgcgagctg
gacgcgcaagaggcgcagatcctcaccgaggtgacccaatggtacaaagacaaccgagac
tggctggccacagcggatatcctacgcttggataccgccgatccctcggttctggcagag
atgcagcgcgcagcggatgggtcgcgctttgtggtgttttccaatcaactggacagcgcg
caacacattctgccccgcccgctttgcttaaccgagcttgacccgaaagcccaatacagg
ctgcatctgcgcaaccgcaatgaggcgacgagcctatcacgcggggcgcccctgctcaaa
tcccaagacctgcaagcctctggagcttggttgatggcccatggggtgcagttgccctat
gccatgcctggctcaatatgggttgttgaaggccgaaaactctga
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