Pseudomonas triclosanedens: OU419_09240
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Entry
OU419_09240 CDS
T09689
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl00540
Lipopolysaccharide biosynthesis
ptrl01100
Metabolic pathways
ptrl01250
Biosynthesis of nucleotide sugars
Module
ptrl_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
OU419_09240 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ptrl01005
]
OU419_09240 (rfaD)
Enzymes [BR:
ptrl01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
OU419_09240 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ptrl01005
]
Core region
OU419_09240 (rfaD)
BRITE hierarchy
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
DapB_N
KR
NAD_binding_4
Gp_dh_N
Motif
Other DBs
NCBI-ProteinID:
WAI51414
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All DBs
Position
1957310..1958302
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AA seq
330 aa
AA seq
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MSIIVTGAAGFIGSNLVKALNQRGETEIIAVDDLTDGDKFVNLADCDISDYLDKRDFIER
YARGDFGVVRALLHQGACSSTMERDGRYMMDNNYRYSCQLLDASLSLGVPFLYASSAAVY
GGGREFRETRACERPLNVYGYSKFLFDQRVRKVLPAARSQIAGFRYFNVYGPREQHKGRM
ASVAFHCFNQFRESGKVKLFGQYGDYPAGGHLRDFVSVEDVAKVNMHFLDHPERSGIFNL
GSGRAQPFNDVALAVINALRTQQDLQPLALDAAIRLGLLEYTEFPDELRGKYQCYTCADI
EFLREAGYRAPMMGVDEGVERYCRWLLQQD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcatcgtcacaggcgctgccggctttatcggcagcaacctcgtcaaagcgctg
aaccagcgcggcgagaccgagatcattgcggtcgacgatctgaccgatggcgacaagttc
gtcaatctcgccgactgcgacatcagcgattacctcgacaagcgcgatttcatcgagcgc
tacgcacgtggcgacttcggcgtggtgcgtgcgctgctccaccagggcgcgtgctccagc
acgatggagcgcgatggccgctacatgatggacaacaactatcgctacagttgccagttg
ctcgatgccagcctgtcgctgggcgtaccgttcctctatgcctcgtcggcggcggtctac
ggtggcggccgggagttccgcgagacgcgcgcctgcgagcgcccgctgaacgtctacggc
tactccaagttcctcttcgaccagcgcgtgcgcaaggtgctgcctgctgcgcgcagccag
atcgccggcttccgctacttcaacgtctacggtccgcgtgaacagcacaagggtcgcatg
gcgtcggtggccttccactgcttcaaccagttccgcgagagcggcaaggtcaagctgttc
ggccagtacggcgactaccccgcaggcggccatctgcgcgatttcgtgtcggtggaggac
gtggcgaaggtcaatatgcatttcctcgatcatcccgaacgaagcggtatcttcaacctg
ggcagcggtcgcgcgcagccgttcaatgacgtggcgcttgcggtgatcaatgccctgcgc
acccagcaggacctgcaaccgctggcgctggatgcggcgatccgcctgggcctgctggag
tacaccgagttccccgatgagctgcgcggcaagtaccagtgctacacctgcgccgacatc
gagttcctccgcgaggcaggttaccgcgcgccgatgatgggcgtggatgagggcgtcgag
cgctattgccggtggctcttgcagcaggactga
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