Panthera uncia (snow leopard): 125927038
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Entry
125927038 CDS
T08832
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
puc
Panthera uncia (snow leopard)
Pathway
puc03020
RNA polymerase
puc03420
Nucleotide excision repair
puc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
puc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125927038
09124 Replication and repair
03420 Nucleotide excision repair
125927038
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125927038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
puc03021
]
125927038
03400 DNA repair and recombination proteins [BR:
puc03400
]
125927038
Enzymes [BR:
puc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125927038
Transcription machinery [BR:
puc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125927038
DNA repair and recombination proteins [BR:
puc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125927038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125927038
NCBI-ProteinID:
XP_049493016
LinkDB
All DBs
Position
E1:complement(56308681..56331550)
Genome browser
AA seq
1989 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLAKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RFARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSXXXTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP
NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP
TSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPV
YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI
SPDDSDEEN
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtccgtgaccgaggggggt
atcaaataccccgagacgactgagggaggccgccccaagcttggggggctgatggatcca
aggcagggggtgatcgagcggactggccgctgccagacctgtgcaggaaacatgacagag
tgccctggccactttggccacattgagctggccaaacctgtgtttcacgtgggcttcctg
gtgaagacgatgaaagttctgcgctgtgtctgcttcttctgctccaaacttctcgtcgac
tctaacaacccaaagatcaaggacattctggccaagtccaaggggcagcccaagaagcgg
ctcacacacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggagaggagatg
gacaataagttcggtgtggagcagccggagggcgacgaggacctggccaaggagaagggc
cacggtggctgcgggcgttaccagcccaggatccggcgctccggcctcgagctgtatgcc
gagtggaagcacgtcaacgaggactcgcaggagaagaagatcctgctgagtcctgagcgc
gtgcacgagatcttcaagcgcatctccgacgaggagtgtttcgtgctgggcatggagccc
cgcttcgcgcggcccgagtggatgatcgttacggtgctgcccgtgcccccgctgtccgtg
cggcccgccgtcgtgatgcagggctccgcccgcaaccaggacgacctgacgcacaagctg
gccgacatcgtgaagatcaacaaccagctgcggcggaacgagcagaacggcgcggcggca
catgtcatcgccgaggacgtgaagctcctccagttccacgtggccaccatggtggacaac
gagctgcccggcctgccccgcgccatgcagaagtccggacgccccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgggtccgggggaacctgatgggcaagcgagtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
ccccgctccatcgctgccaacatgacttttgcggagatcgtcacgcccttcaacatcgac
agacttcaggagctggtgcgcagggggaacagccagtacccgggcgccaagtacatcatc
cgggacaacggcgatcgtatcgacctgcgtttccaccccaagcccagtgaccttcacctg
cagaccggctacaaggtggagcggcacatgtgcgacggagacattgttatcttcaaccgg
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctgccctggtcg
actttccgcttgaatctgagcgtgacaactccgtacaatgctgattttgacggggacgag
atgaacttgcacctgccacagtctctggagacccgggcggagatccaggagctcgccatg
gtgccacgcatgattgtcaccccccagagcaatcgccccgtcatgggcatcgtgcaggac
acgctcaccgcagtgcgcaaattcacaaagagagacgtcttcttggagcggggtgaggtg
atgaacctcctgatgttcctgtccacgtgggacgggaaggtcccacagccagccattctg
aagccccgtcccctgtggacgggcaagcagatcttctccctcatcataccgggccacatc
aactgcatccgcacccacagcacccatcccgacgatgaggacagtggcccctacaagcac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcttg
tgtaagaagtccctgggcacgtccgccggctcgctggtccacatctcgtacctggagatg
ggtcacgacatcactcgcctcttctactccaacattcagaccgtcattaacaactggctg
ctcatcgagggtcacaccattggcatcggggactccattgcggactctaaaacttaccag
gacattcagaacacgatcaagaaggccaagcaggatgtgatagaggtcatcgagaaggct
cataacaatgagctggagcccaccccggggaatactctgcggcagacatttgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagaccggctcctccgcccagaagtccctg
tctgaatacaacaacttcaagtctatggtcgtgtccggggccaaaggttccaagatcaac
atctcccaggtcatcgccgtcgtcgggcagcagaacgtagagggcaagcggatcccgttc
ggcttcaagcaccggaccctgccccacttcatcaaggacgactacgggcccgagagccga
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgcgaggggctcatcgacaccgctgtcaagacagctgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaagtacgacgccaccgtgcgc
aactccatcaaccaggtggtgcagctccgctacggcgaggacggcctggccggcgagagc
gtcgagttccagaacctggccaccctcaagccgtccaacaaggcttttgagaagaagttc
cgcttcgattacaccaacgagagggccctgcggcggactctgcaggaggacctggtgaag
gacgtgctgagcaacgcgcacattcagaacgagctggagcgcgaatttgagcggatgcgc
gaggatcgggaggtgctcagggtcatcttcccaaccggcgacagcaaggtggtcctcccc
tgcaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctc
ccctccgacctgcaccccatcaaggtcgtagagggagtcaaggaattgagcaagaagctg
gtgatcgtgaatggggatgaccccctgagccggcaagcccaggagaacgccacgcttctc
ttcaacatccacctgcgctccacgctgtgctcccgccgcatggccgaggagttccggctc
agcggggaggccttcgactggctgctcggagagatcgagtccaagttcaaccaagccatt
gcccatcccggggagatggtgggggccctggctgcacagtcccttggagaacccgccacc
cagatgaccttgaacaccttccactacgccggtgtgtctgccaagaacgtgaccctgggc
gtgccgcgactcaaggagctgatcaacatttccaagaaaccaaagaccccgtcactcacg
gtcttcctgctgggccagtctgctcgggacgccgagagggccaaggacattctgtgccgc
ctggagcatacgacgttgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacagtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcct
gactttgacgtggcccgaatctccccctggcttctgcgggtggagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgaaaagatcaatgctggttttggc
gatgacttgaattgcatctttaacgatgataacgcggagaagctggtgctgcggatccgc
atcatgaacagcgacgagaacaagatgcaggaggaagaagaggtggtggacaagatggac
gacgacgttttcttgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggc
attgagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatc
atcatcacggaggacggagagttcaaggccctgcaggagtggatcctggagaccgacggt
gtgagcctgatgcgggtgctgagtgagaaggacgtggaccccgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatcgaagccgtgcggaaggccttggagcga
gagctctaccacgtcatctcctttgacggttcctacgtcaattaccgccacctggctctc
ctgtgtgataccatgacctgtcgtggccacttaatggccatcacgcgacacggggttaac
cgccaggatacgggacctctcatgaaatgctcctttgaggaaacggtggatgtgctcatg
gaagcggccgcgcacggagagagcgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctcgctccggccggcaccggctgcttcgacctcctgctcgacgcggagaagtgc
aagtacggcatggagatccccaccaacatccccggcctgggggccgccggacccactggc
atgttcttcggctcagcgcccagtcccatgggagggatttctccggccatgactccctgg
aaccagggtgccactccggcctatggcgcctggtctcccagtgtcggaagtgggatgacc
ccaggggcggctggcttctcccctagtgctgcttcggatgccagcggcttcagtccaggc
tactcccctgcgtggtcccccacgccaggctcgccgggctccccgggcccctcgagcccc
tacatcccctcaccaggtggtgccatgtctcctagctactcacccacgtctcctgcctac
gagcctcgctcccccgggggctacacaccccagagcccctcctactcccccacctcgccc
tcctactccccgacctctccgtcctactctcccaccagtcctaactatagccccacgtca
cccagctactccccgacctcccccagctattctccaacgtctcccagctactccccgact
tctcccagctactccccgacctctcccagctactctcccacttccccgagctactctccc
acctctcccagctactccccgacctctcccagctactctcccacttcnnnnnnnnnnacc
tctcccagctactccccgacctctcccagctactctcccacttctcccagctactccccg
acctctcccagctactccccgacctctcccagctactcccccacatcccccagctactcc
cccacatcccccagctattctcccacatcccccagctactcccccacatccccgagctac
tccccgaccagccctaactactctccgaccagtcccaattataccccaacgtcccccagc
tatagcccgacatcacccagctactcccccacgagccccaactacacaccgacaagccct
aactacagcccaacctctcccagctactctccgacttcacccagctactccccgacctcg
ccaagctactccccgtcaagcccacgatacacaccgcagtccccgacctacaccccgagc
tcccccagctacagccccagctcccccagctacagccccacctcgccgaagtataccccc
accagtccctcttacagccccagttccccagagtacaccccgacctcccccaagtactcg
cccaccagccccaagtactcacccacctcccccaagtactcgcccaccagccccacctac
tcgcctaccaccccaaaatattccccgacgtctcctacttactcgccaacctctccggtc
tataccccgacctcccccaagtactcgcctaccagccccacctactcgcccacctccccc
aagtactcgcccaccagccccacctactcgcccacctcccccaaaggctccacctactcg
cccacctcccccggctactcgcccaccagccccacctacagcctcaccagcccggccatc
agcccagacgacagtgatgaggagaactga
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integrated database retrieval system
