Pseudomonas viridiflava: CFBP1590__3997
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Entry
CFBP1590__3997 CDS
T06554
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pvd
Pseudomonas viridiflava
Brite
KEGG Orthology (KO) [BR:
pvd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvd03009
]
CFBP1590__3997 (rimO)
Enzymes [BR:
pvd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CFBP1590__3997 (rimO)
Ribosome biogenesis [BR:
pvd03009
]
Prokaryotic type
ribosomal protein modification factors
CFBP1590__3997 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
CSD2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
SMS11583
UniProt:
A0A1Y6JTE6
LinkDB
All DBs
Position
I:4443351..4444694
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AA seq
447 aa
AA seq
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MSTVTTPSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDS
AKAESLEVIGEALAENGKVIVTGCMGVDESVIRKVHPSVLSVTGPQQYEQVVNAVHEVVP
PRHDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKLMKRPAFEDKTLARIKNWREQCPD
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVK
QDRWDRFMAHQQAISAARLQMKIGREIEVLIDEVDERGAVGRCFFDAPEIDGNVFIGLED
DSTVKPGDKIMCRVTDADEYDLWAEII
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgtcaccacgccatccgcccccaaggttggattcgtctctctgggttgtccg
aaagcgctcgttgactccgaacgcatcctgactcagctgcgcatggaaggttacgaagtc
gttccgacttacgaagacgccgacgtggttgtcgtcaatacctgcggcttcattgactcg
gccaaggctgagtcgctggaagtgatcggtgaggcactggcggaaaacggcaaggtgatc
gtgaccggctgcatgggcgtggatgaaagcgtcattcgcaaggtccacccgagcgtgttg
tcggtgaccggtcctcaacagtacgagcaggtcgtcaatgccgtgcacgaagtcgtgccg
cctcgccacgatcacaatccgctgatcgatctggtgccgccgcaaggcatcaagctcaca
ccgcgtcactacgcgtacctgaaaatttccgaaggctgtaaccacagctgcagcttctgc
atcattccgtcgatgcgcggcaagctggtcagccgtccggtaggcgatgtgctcgacgaa
gccaagcgtctggtcaaatccggcgtgaaggaattgctggtgatctcgcaggacaccagt
gcctacggcgttgacgtcaagtaccgcaccggtttctgggacggccagccagtcaagacc
cgcatgaccgagctgtgtcaggcgctgggttccatgggcgtctgggtccgcctgcattac
gtttatccgtacccgcacgttgacgagctgatcccgctgatggcggccggcaagatcctg
ccgtacctggacatcccgttccagcacgccagccccaaggtcctcaagctgatgaagcgc
cctgccttcgaggacaagaccctggcccgcatcaagaactggcgcgagcagtgccctgac
ctgatcatccgctcgacctttatcgtcggcttcccgggcgaaaccgaagaagacttccag
tacctgctggactggctgaccgaggcccaactggaccgcgtcggctgcttccagtactcc
ccggtcgaaggtgcccccgccaacctgttggacgccgccattgtgccggatgatgtcaaa
caggaccgttgggaccgcttcatggcgcaccagcaggccatcagcgccgctcgtctgcag
atgaaaatcggtcgcgagatcgaagtgctgatcgacgaagtcgatgaacgcggtgcggtt
ggccgctgcttcttcgatgcccctgaaatcgacggtaacgtgttcatcggcctggaagac
gacagcacggtcaagccgggtgacaagatcatgtgccgcgtgaccgacgccgatgaatac
gacctgtgggccgaaatcatctga
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