KEGG   Panicum virgatum (switchgrass): 120640460
Entry
120640460         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9B-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120640460
  09124 Replication and repair
   03420 Nucleotide excision repair
    120640460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120640460
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120640460
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120640460
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120640460
SSDB
Motif
Pfam: TFIIS_C CpXC
Other DBs
NCBI-GeneID: 120640460
NCBI-ProteinID: XP_039772234
LinkDB
Position
7K:19901352..19904340
AA seq 144 aa
MQVLNLIACGIFFCCVPIFYIVPNTELYVEILTWHTLNSNPTSAHAQEDRDRRTLFFACR
NCEHQDVSDNNCVYRNEVHDTAGERTQVLQDVAADPTLPRTKTVCCALCGHGEAVFFQAT
ARGEEGMTLFFVCCSPDCGHRWRE
NT seq 435 nt   +upstreamnt  +downstreamnt
atgcaagtattgaacttaattgcttgcggaatttttttttgttgtgtaccgattttttat
attgtaccgaataccgaattgtatgttgaaattttgacatggcataccctaaattccaat
cctacgtccgcgcatgcccaggaggacagggacaggcgcaccctcttctttgcatgtcgc
aactgcgagcaccaggatgtctctgacaataactgcgtctatcggaacgaggtgcacgac
actgctggggagcgaacacaggtcttgcaggatgtagctgctgacccaactcttcccaga
accaagactgtctgctgcgctctctgtgggcacggagaggctgttttcttccaggctacg
gcaagaggggaggaggggatgaccctgttctttgtgtgctgcagccctgattgcggtcac
cggtggagggaatga

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