Panicum virgatum (switchgrass): 120641330
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Entry
120641330 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120641330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120641330
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120641330
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
120641330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120641330
NCBI-ProteinID:
XP_039773337
LinkDB
All DBs
Position
7K:37667519..37681488
Genome browser
AA seq
1398 aa
AA seq
DB search
MAKPEEKLRCTKEPFIEDVGAHKIKSIRFSVLSGSEIRKSAEVQVWNSRIYGHDMKPVPN
GLLDMRMGLPSKREKDAVCSTCHGPFSACPGHFGYLKLALPVFNVGFFNNMLDVLKCICK
GCSRVLLAEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLTSCPRCEYKNGVVKKGRA
GLIVIHDCSKILDGHAEELKNALQNKKEKVSTSSVRMLDPATVLSLFRRMTDEDCELLNL
GDRPEKLIVTEIAVPPVPIRPSTVVGNTRTSNEDSITAILKSIVNTNSILKETLQAGGLF
TKCFDCWQQLQLQVVEYVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTV
ISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGTK
LSLKFGDRRIAARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN
ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS
FLVTRKDAFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNARTK
VFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLG
NGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKK
IDEGYKQCHDLISLFAKGALALHPGCNAAETLEHRITGVLNEIRTAAGNVCMDTLHWRNS
PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVAN
SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG
IVQFLYGDDGMDPAKMEGKDGRPLNLDQLFMKVTATCPQRGPDTLSPVDIRQMLEDKLAQ
HGTSSDGGCSQEFEKGLREFVEKRINLLECTRRALHLDVGHVGKKDSCVKEFIAANISGI
SAKQLQVFLDTCFSRYHSKTIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG
VPRIKEIINAAKKISTPIITAELLSRKDVLSARIVKGAMEKAVLGEVASDIKIILKPSQA
NLVVKLDMQLIEALHMGISADTVQLSILNHPKIKLKSEHVRVIDRDKLRIYPAGTDKSKL
RLELHNLKSMLPKVIVKGIPTVERVVIDEIKKKDNTVEKYNLLVEGTNLLAVMGTPGVDA
RNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGI
TRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVR
QRLDHLPEFKYQPDPILS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggaggagaagctgcgctgcacgaaggagcccttcatcgaggacgtcggc
gcccataagataaagagcatccggttcagtgtgctctcgggcagcgagattcgcaagtcc
gctgaggtgcaggtctggaacagccggatctatggtcatgacatgaagccagtccccaat
ggtttgctcgacatgcgaatgggactccctagcaaacgagaaaaggatgctgtatgcagc
acctgccatggtccattttctgcatgtcctggtcattttggttacctgaagctggcgctt
ccagtttttaatgtcggctttttcaacaatatgctggacgtgttgaagtgtatctgcaag
ggctgtagtagggttcttcttgcagagaaagaccgccgagagtttctgaagaagatgaga
aatcccagagctgatgcactacagaaaagtgctaccatgaaaaaagtgagggacaaatgc
aagctaaccagctgcccccggtgtgaatacaaaaatggtgtagttaaaaaaggcagagca
ggcctgatagtgattcatgattgcagcaaaattttggatggacatgcagaagaactgaag
aatgcattacaaaacaagaaagaaaaagtctccacgagttcagttcgcatgttagaccct
gcaactgttctctctctattcagaagaatgactgacgaggattgtgaattgctaaacctt
ggtgataggccagaaaaacttattgtgacggagattgcagtgccacctgtacctatacgg
ccttctactgttgttggtaatactagaacaagcaatgaagatagcattactgctatattg
aagagcattgttaatacaaattccatacttaaggagacccttcaagctgggggtctgttc
accaagtgctttgattgctggcaacaacttcaacttcaagttgttgaatatgttaatagc
gatgccccctgtctccctgagtcgcaacatcgtggtcttgttcaacgactgaaagggaag
acaggccgatttcgtggtaacttatctggaaaacgtactgagtacactggaaggactgtc
atatctcctgatccaaatttgagaataacagaggtggctattcctgtgttgatggctcga
gtcttgacttatcctgaaagggtttcaaactataaccttgagaagttgcgtcagtgtata
cgaaacggaccatataaacatccaggggctaattttattataacccctgatggcacaaag
ctgagcttaaagtttggtgatagaaggattgctgcgcgggatttaaagtgtggctataca
gttgaaaggcatttagaggatggtgatgttgtcctgttcaacagacagccaagtttgcat
agaatgtcgattatgtctcacagggcaaggataatgccatggagaacactgagatttaat
gagtctgtttgcaacccgtataatgctgattttgatggcgatgaaatgaatttgcatgtc
cctcagacagaggaagctcgcactgaagcacttatgctcatgggggttcagaataattta
tgtactcctaagaatggggagatactggttgcttccacacaagatttcttgacctcatct
tttctggttacaagaaaagatgctttctatgatagatcttcctttactcttttgtgctca
taccttggtgatgcaatggagaacattgatttgccaacaccagccttgattaaacctatc
gagctttggactggtaaacagttattcagtgtgttagttcgacctaatgcacgtacaaag
gtgtttctgaatcttgctgttaaagaaaaaatttattcaaaaaagaaggaaaaaaaagag
ggggaagaggaggaaaaggaaacaatgtgcggaagggaaacaatgtgtcccaatgatggt
tatgtctacttccgaaatagtgaactgttatccggacaagttgggaaggccaccttaggt
aatgggaataaggatggcatttactctgttcttctaagagattacaattctcacgctgca
gcaagctgtatgaatcgcttggcaaaatttagtgcaagatttattgggaaccatggtttt
tccattggtgtggatgatgtccaaccaggagaacatttaaatcggcaaaagaaaaagaaa
atagatgaggggtacaaacaatgccatgatcttatttctttgtttgccaaaggtgcactc
gcattgcatcctggttgcaacgcagctgaaacattggagcataggataactggcgtgttg
aatgaaatcagaacggctgctggaaacgtgtgcatggatacacttcactggaggaacagc
ccattgattatgtctcagtgtggatctaaaggttctccaatcaatatcagtcagatggtt
gcgtgtgttggccagcaatcagttggtgggcgtcgtgccccagatggttttatagataga
actcttcctcactttcctataaattcgaagacccctgcagctaaaggttttgttgctaat
tcgttctatactggtttgactgctactgagtttttcttccacaccatgggtggccgagag
ggtcttgttgacacagcggtcaaaacagcagaaactggatatatgtcccgcagattgatg
aagggtttagaagatctctctgttttctatgatcagacagtccgtaatgctagtggtggt
atagttcagtttttgtatggagatgatggtatggatcctgcaaagatggaaggaaaagat
ggcagacccctaaatttggatcaattgtttatgaaagtcacggcaacatgtcctcaaagg
ggaccagatacattatctccagtcgatatccgacagatgttagaggataagctcgcacaa
catggcacctcatctgatggtggttgtagccaagagttcgagaaaggcttgagagaattt
gttgagaaacgtataaacttactggaatgcacaagaagggcacttcatctagatgtgggc
catgtaggaaagaaagattcttgtgttaaagaattcattgctgctaatatatctggtata
tctgcaaaacaactacaggttttcttggatacttgtttttctcgttaccactcaaagaca
attgaagcaggagcatctattggagcaattggagctcagagtattggagaaccagggact
cagatgacactgaaaacatttcattttgcaggagtagctagcatgaatgttactcttggt
gttcctcgcatcaaggaaattatcaatgctgctaaaaagataagcactcctattatcaca
gctgagcttctgtctaggaaagatgtgctgtctgcacgcattgtgaaaggagctatggag
aaagcagtgctgggcgaggtagcatcagacataaagattatcttgaaaccaagtcaggca
aacttagtggtcaaacttgatatgcaacttatagaagctctgcacatgggaatatctgct
gacactgtgcagctgtcaattttgaatcatccaaagatcaagttaaaatctgagcatgtc
cgtgtcatcgatagagacaagttgagaatatatccagctggaacggacaagtccaaactt
cggcttgagctgcataacctcaaatccatgcttccaaaagtgattgtgaagggcattcca
actgttgaaagagttgttatcgacgaaataaaaaaaaaggacaacactgtagaaaaatac
aacttgttggttgaaggaacaaacctcctggcagtcatgggtactccgggagttgatgct
aggaatacaaaaagtaatcatatcatggaaatgaacagcacacttggaattgaagctgcg
aggagatctattattgatgaaattcagtacacaatgaaaagtcatggcatgaatattgat
gtgagacatatgatgcttctggcagatttgatgacatacaagggtgaagttcttggcatt
actagatatggcattgcaaagatgaaaagcagtgtgctgatgcttgcttcgtttgagaaa
acctccgaacatctattcaatgcctcatacagtggtcgtgaggacgagatagagggagtc
agcgaatgcattatcatgggcattcccatgcaacttggtaccggtattctcaaagtcagg
caaaggctcgaccatctccctgaattcaagtaccagccggacccgatactgtcgtaa
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