Panicum virgatum (switchgrass): 120641331
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Entry
120641331 CDS
T07260
Name
(RefSeq) nuclear-pore anchor-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120641331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641331
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120641331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
120641331
NCBI-ProteinID:
XP_039773339
LinkDB
All DBs
Position
1K:complement(50889725..50910695)
Genome browser
AA seq
2050 aa
AA seq
DB search
MPLFISDEELRLLGGDTAAVAERADAAIRELRRQVDTVRAEADAAAIAAEQTCALLEQRY
ASLSAEFDRSQAEAAELTAAAERRAAELASSQAEIHQLRIQAIAKDGEVERLKVEISELH
KSKCQSLELIEQRDAEIKEKDDIIQSYYDKIVNLADSSASKEARIQEVEAKFTHCQAMCN
RITQEKELLEKHNLWLDEELKVKVKNLAELRKTNMDEEARMSARIAELEREISETSSSLR
RGKERISELEQRVSYMEKELCSTKDAAAANEQRLGAELSTVMKLAELHKESSEEWSKKAG
ELEGVIKALETHLTQVEDEYKEKLEKEILSRRDLEKEAADLKQKLEKCEFDLENTRKSRE
LSLVPLTSVTADSSDLVDSRQGLPMSDDLNQNDLMVIPKVPSGVSGTALAASLLRDGWSL
AKIYEKYQEATDALLHERRGRRHAEAVLERVLHEIEEKAELILDERAEHDRMVEAYALMD
QKLQQALLEHDNFENTIRNLKSELKRRERDHSVAQKEIDDLQKQVAVLLKECQDIQLRCG
SSLPNVGNGAFSASLGSVLSNVEHNIKDNQMSFKDINGLVQQNVQLRNQVHMLSADLDKK
DMELRESFQIELKKITDDAAFRVEKVMKKSEEQAIMIESLHRSVAMYRKLCEEQQKTRSN
VESVPNNLQDSGRTDLMVLFEGSQEVSKKAYEQVSERARSLDEELTKLRAELVSLRSERD
KAVLEADFARDRLNGFTAELEHQRKETNSISLRNAELMHLIVDYERRLREDSDSKQALEE
NSRNLLMEVSVLKGQKEILVKSENRALDEVRDLTERVHRLQATIDTIHTTEEVRENARSM
ERRNHEEHIKRLERDWAELKKELQEQRDHVRILTLDKKNAFDSCMKQVEDMRKELQSSCK
AASDAESRAAILEAKCSDLEAKLKSRKVIFRDAGHEISATSEDNDELFQLKEELEKYKEE
AQANKNYMVQYKEIAHSNEVALKQLESAHQDYKAEAEVGRKALEDEIAKLRDKLSDMEKS
YVMKCEETAIAIESKEKQITSLMNEISVLRTEISERLPQVEQLQMELASSKSALDEQYKR
WRTAQDNYERQVILQSETIQELTNTSKQLSSLQHEIAILRQTADAQKAENDSLRALGEQE
KIGLLKEKDDALRKYNELNDQNRILHNQLEALHIRLAEKERSIAGLSSQRTDSHGEDDLH
SVISYLRRSKEIAETEISLLKQEKSRLQIELESALKSAKEAQDLLRSQADSARTLMLKDE
EFKSLQLQVREINLLRESNIQLREENRHNFEECQKFRDEAQKAKMESERLQSLVLKKEVD
AEMCKKELEMQKVEIANLNQRISELVENSKGIDLNTYEGMKNELQNIKSTLRENSMELEI
AKKLLSEKEVAVRNLEEKLAVCQSELDSREKKLNDVESSMKSEMDRLKKINFSIKRKLDN
VVKEKEEVIKENQSLLKQMEDLKSSQKMMSETTFEQAIKEKDFRIQTLERTLEKERDDNK
KEKANRKRNEKLQLNILQRVQQEKKQVEESIEKHKQAVKEVIENYPGLSSDVPPVSALEE
QILSYFRMANDMEESSPFRDAAVTQSPAVETALTDAPGSASGRLVDTPPRLTKAKMVEDR
AVAILSKQSTEVRRPGGRRPLVRPTLERTEEPQADMDTSVADVSMVGQDKGGPSLEREAS
GSQPVLQPSSRKRLISSSQTIDSTSQGEANDANPPSKRPKEEESSQGASEVKSDQPPVGE
IAAQVGVLPSTDDQDGQQSTEEMEPMEEAEATKDDDVGDKDDSGANADASVDTKGQDADV
STDINVVPVEDAQAKSDAVIESFDEDQKIEDSKEDAQLATATDVDDEMEEGELPDEPEPP
SETALGETSREPTSDIGEQAGNVFRAASPGGLTERSDVDMSEIEGDTTADHAAVEPDQSP
VAHSGAADASPSRTADASPAREPSLNTVQAGASSRPQNTSTTTTEAREPSPNPAQAVASS
EQRNTSTVTEAAETRSRTINLTERARQNRQARFQQRAQPPATARGRGQQSATQRKDAAGR
GSRGRGGRQT
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgttcatctccgacgaggagctccggctcctcggcggcgacacggccgccgtc
gccgagcgggccgacgccgccatccgcgagctccggcgccaggtggacaccgtccgcgcc
gaggcggacgcggccgcgatcgccgccgagcagacctgcgccctcctcgagcaacgctac
gcctccctctccgcggagttcgatcggtcccaggccgaggccgccgagctcaccgccgcc
gcggagcgccgtgccgccgagcttgcctcctcccaggcggagatacatcagcttcgcatc
caggcgattgctaaggatggcgaggtggagaggttgaaagttgaaatctcggagctgcac
aagtcgaagtgtcagtcgttggagttgattgagcagagagatgctgaaataaaagagaag
gatgacatcatccagagctattatgacaaaattgtcaatctggcagatagttctgctagt
aaagaggctaggatacaagaggttgaagccaagtttacccattgtcaggcaatgtgcaac
cgcattacccaggagaaggagctgcttgaaaagcataatctatggcttgatgaagaactg
aaagtaaaagtgaagaacttagctgaactaaggaaaacaaatatggacgaggaggctagg
atgtcagctaggattgcagagcttgaaagagagatttctgaaacttctagctccttgagg
cgaggcaaagaacgtatctctgaactggagcaaagggtatcttacatggaaaaggaattg
tgctcaacaaaggatgccgcagctgctaatgaacaacgtctgggtgctgaactttcaact
gtcatgaaacttgctgaacttcacaaagaaagttctgaggaatggtcgaagaaggctggg
gagcttgaaggtgttattaaagcattagagacgcatctgacccaagttgaagatgagtac
aaggaaaagcttgagaaggagatcttatccaggagagaccttgaaaaggaagctgccgac
ttgaagcagaagcttgaaaaatgtgagtttgatttggagaatacaaggaagtccagggaa
ttgagcctcgttccactgaccagtgttacagcagactcctctgatttagtagactcaaga
caaggactgccaatgtctgatgatttaaatcagaatgacctaatggttattccaaaggta
cctagtggtgtttctggaactgcattagctgcttctcttcttcgtgacggttggagtctt
gctaagatctatgagaaataccaagaagctactgatgctttacttcatgagaggcggggg
aggagacacgcagaagcagttcttgaaagggtcttgcatgaaatagaagagaaggctgaa
cttatcctagatgaacgagctgagcatgatagaatggttgaagcttatgctcttatggac
cagaaattgcagcaagcattgctggagcatgataattttgaaaatactattaggaatcta
aagtctgagttgaaaaggcgggaacgtgatcatagtgtggcacagaaggaaatagatgat
ctgcagaaacaagtggctgttctgctaaaagaatgtcaagacatacagcttcgctgtggt
tctagccttcctaatgtaggtaatggtgccttttctgcaagcttaggcagtgttctttcc
aacgtagagcacaatatcaaggacaatcagatgtcttttaaagatatcaatggattagtt
cagcagaatgttcaacttcgaaatcaagttcacatgctctcagctgatcttgacaaaaag
gacatggaactacgggagagcttccaaattgagttgaagaaaattactgatgatgctgca
ttcagggttgaaaaagtgatgaagaaatctgaagaacaagcaataatgattgaatctctt
catcgatccgtagcgatgtatcgtaagctttgtgaggagcagcagaagactcgttcgaat
gttgaatcagtacccaataatttgcaagatagtggcagaacggacctgatggttctgttt
gaaggatcacaggaagtctcgaagaaagcttatgagcaagtctctgagcgagccaggagc
ctcgatgaagagctgacaaagttgagggctgagcttgtgtctctgcggtctgaacgtgat
aaggcagtgcttgaagctgattttgctcgggaccggcttaatgggtttacagcagagctt
gagcaccagaggaaggagactaattccatttcactgagaaatgcggagttgatgcatctg
atagttgattacgaacgtagacttcgtgaagattcggattctaagcaagccttagaggag
aattcaaggaatctattgatggaggtgtccgttctgaagggtcaaaaagagattctagta
aagtcagagaatagagctttggatgaagtccgtgatttaacagagcgagtgcatcgtctg
caggctacgattgacaccatacataccactgaggaggttcgagagaatgcaaggtctatg
gaaaggagaaatcatgaggagcacattaagcgactagaaagggattgggctgagcttaag
aaggagcttcaggagcagcgagaccatgttcgtattctgacccttgataagaaaaatgca
tttgacagctgtatgaagcaagtggaggatatgagaaaggaactgcagagctcgtgcaaa
gctgcttctgatgctgaatcaagggctgccattttggaggccaagtgttctgatttagag
gcaaagctgaaatcaagaaaggtcatttttagggacgctggccatgaaatctcagccaca
tctgaggataatgatgaactattccagttgaaagaggagttagaaaaatacaaggaggaa
gcacaagcaaataagaactacatggttcagtataaagaaattgcgcactcaaatgaagtt
gcactaaagcaattggaatctgcccatcaggactacaaggcagaggccgaggttggcagg
aaagccttggaagatgagattgctaaattgagggataagttatctgacatggagaagagc
tatgtgatgaagtgtgaagaaacagccattgcgattgaatctaaagagaagcaaataact
tctctcatgaatgagatttccgttctgagaacagaaatttctgagagattaccacaggta
gaacaattacaaatggaattggcttcctcaaaaagtgcactagatgaacaatacaagcgt
tggcgaactgcccaagacaattatgaacggcaggttattctgcaatctgaaacaatacag
gagttgacaaatacttctaagcagctatcttcattgcagcatgaaatagctatacttcgc
cagacagcagatgcgcaaaaagctgaaaatgattccctaagagcacttggtgagcaagaa
aagataggattattgaaagaaaaggatgacgccttgcggaagtataatgagctaaatgat
cagaatagaattctccacaatcagttagaagctctgcacattcggttagctgagaaagaa
cggagtattgctgggctttcatcacaacgtactgactcgcatggcgaagatgatcttcat
agtgtaatcagttatctgcgcagatcaaaagaaatagcagaaacagagatatcattgctt
aaacaggagaagtcacggcttcagatagaactggaaagtgcattaaagtctgcgaaggag
gcacaggacttgctgcgcagtcaggctgatagtgccaggacattaatgctaaaggatgaa
gaattcaagtcactgcagctccaggtcagagaaattaacttgcttcgtgaaagcaacata
cagcttagagaggagaacaggcacaattttgaagaatgccagaaattccgagatgaagct
caaaaggccaaaatggaatctgagaggttgcagagtcttgtactgaagaaggaggtagac
gctgaaatgtgcaaaaaggaattagaaatgcagaaggtggaaatagcaaatctcaaccaa
aggatttctgagttggttgaaaatagcaaaggcattgatttgaacacttatgagggcatg
aagaatgaacttcaaaatatcaaatcaaccttgagagagaattctatggagcttgaaatt
gcaaaaaaacttctttctgagaaagaagttgccgtaagaaatttggaggagaagcttgct
gtctgccagtctgaattggattccagggaaaagaagctaaacgatgtagagtcatccatg
aaatctgagatggacaggcttaagaagattaatttctccattaagagaaagcttgacaat
gttgtaaaagagaaggaggaggtcattaaagaaaaccaaagccttctgaagcagatggag
gatcttaaatcaagtcagaagatgatgtcagaaactacatttgagcaggctataaaagaa
aaggatttcaggatacagacattggaaagaaccctggagaaggagagagatgataacaag
aaagaaaaagcaaaccgtaaaaggaatgagaaattacaactgaatattctccaaagggtt
caacaggagaagaaacaagtggaagagtctatagagaagcataagcaggctgtgaaagag
gtgattgagaactatcctggactatcatctgatgtcccaccagtctctgcactggaggag
caaattctttcatacttccgcatggctaacgatatggaggaatctagtccattccgtgat
gctgcagtgactcagagtccagctgttgaaactgcccttactgatgcgcctggttcagct
tcaggtcgactggtagatactccaccaaggctgactaaagctaaaatggtggaagataga
gcagttgctattttatccaaacaaagcactgaagtacgtagacctggaggaagaagacct
cttgtccgtcctactcttgaacgaactgaagaaccacaggctgatatggatacatcagtt
gctgacgtctcgatggttggtcaggacaaaggtggcccatcactagagcgtgaagcttct
ggcagtcaacctgtgctacaaccttcaagtcgtaaacgtctcatatcttcttcacagaca
atagacagtacctcacaaggtgaggctaacgatgccaatcctccatcgaagaggcccaag
gaggaagaatcttcacagggggctagtgaggtcaagagtgatcagccacctgttggggag
atagcagcacaggttggtgtgcttccgtccacggatgaccaagatggacaacagtctaca
gaagagatggagccaatggaagaggctgaggcaacaaaggatgatgacgtgggtgataaa
gatgactctggagcaaatgcggatgcatcagtggacaccaaaggccaggatgctgatgtt
agtactgacataaatgtggttcccgtagaagatgcgcaagcaaagtcagatgcagtgatc
gaatcatttgacgaggaccaaaaaattgaagattccaaggaagatgctcagcttgctact
gcaactgatgttgatgatgagatggaggagggagagttgccggatgaacctgaaccacct
tcagaaactgcactcggagaaactagtagggagcctacttcagatattggtgagcaagct
ggtaatgtttttagggcggcatctccaggagggctgacagagaggagtgatgttgatatg
tcagagattgagggtgataccacagctgatcatgctgcagtggaaccagaccaaagtccg
gtagcacattcaggagctgctgatgcctcacctagcagaactgctgatgcatctcctgca
cgtgaaccttcccttaatacagtccaagctggtgcatcttctcgaccgcagaataccagc
actactacaacagaggcacgtgaaccttcacctaacccagcccaagctgttgcatcctct
gaacagcggaataccagtactgtaacagaggctgctgaaactcgttctagaacaatcaac
ttaactgagagggccagacaaaataggcaagccaggtttcaacaacgtgcacaaccacct
gccactgccaggggtcgtggccagcaatctgctacccagaggaaagatgctgctggccga
ggatccagggggcgaggggggcgtcagacctag
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