Panicum virgatum (switchgrass): 120648385
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Entry
120648385 CDS
T07260
Name
(RefSeq) lycopene beta cyclase, chloroplastic-like
KO
K06443
lycopene beta-cyclase [EC:
5.5.1.19
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120648385
Enzymes [BR:
pvir01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.19 lycopene beta-cyclase
120648385
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Motif
Pfam:
Lycopene_cycl
Pyr_redox_2
DAO
FAD_binding_2
Pyr_redox
Thi4
NAD_binding_8
FAD_binding_3
FAD_oxidored
HI0933_like
NAD_binding_9
3HCDH_N
Pyr_redox_3
2-Hacid_dh_C
GIDA
Motif
Other DBs
NCBI-GeneID:
120648385
NCBI-ProteinID:
XP_039781085
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Position
1K:complement(7503985..7505841)
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AA seq
492 aa
AA seq
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MAAAALLLRTHHHPCKPPPPPAARAPLLCRAAAGTSAGPASAAALRSLAPPTRPELLSLD
LPRYDPSRARPVDLAVVGGGPAGLAVAQRVAEAGLSVCAVDPSPALVWPNNYGVWVDEFE
AMGLSHCLDTVWPSASVFIDDGRVKSLDRPYARVARRELKSAMMGRCVANGVAFHQAKVA
KAVHYDASSILICDDGVSIPATIVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDGHPF
DIDKMLFMDWRDSHLAEGSEIRERNRRIPTFLYAMPFSPTRIFLEETSLVARPGLAMDDI
QERMAARLRHLGIRVRSVEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVART
LATAPIVADAIVRFLDTGDGRVGLAGDALSAEVWKQLWPANRRRQREFFCFGMDVLLKLD
LDGTRRFFDAFFNLEPHYWHGFLSSRLFLPELLMFGLALFGNASNTSRLEIMAKGTGPLG
KMIGNLIQDRDG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgccctcctcctccgcacccaccaccacccctgcaagccgccgccgccg
cccgcagcgcgcgcgcccctcctctgccgcgccgcggcggggacgtcggccgggccggcg
tcggccgcggcgctgcggtcgctggccccgcccactcggccggagctgctgtccctcgac
ctgccccgctacgacccgtcccgcgcccgccccgtggacctcgccgtggtgggcggcggg
cccgcgggcctcgccgtggcgcagcgcgtggcggaggccggcctgtcggtgtgcgccgtc
gacccgtccccggcgctggtgtggcccaacaactacggcgtgtgggtggacgagttcgag
gccatgggcctctcccactgcctcgacaccgtctggccgtcggcctccgtcttcatcgac
gacggccgcgtcaagtcgctcgaccgcccctacgcccgcgtcgcgcgccgcgagctcaag
tccgccatgatgggccgctgcgtcgccaacggcgtcgccttccaccaggccaaggtcgcc
aaggccgtccactacgacgcctcctccatcctcatctgcgacgacggcgtctccatcccg
gccaccatcgtgctcgacgccacgggcttctcgcgctgcctcgtgcagtacgacaagccc
tacaaccccggctaccaggtcgcctacggcatcctcgccgaggtggacggccacccattc
gacatcgacaagatgctcttcatggactggcgcgactcgcacctcgccgagggctcggag
atcagggagcgcaaccgccgcatccccacgttcctctacgccatgcccttctcgcccacg
aggatcttcctcgaggagacgtcgctcgtcgcgcgcccgggcctcgccatggacgacatc
caggagcgcatggcggcgcggctcaggcacctggggatacgcgtccggagcgtcgaggag
gacgagcgctgcgtcatccccatgggcgggccgctgcccgtgctgccgcagagggtggtc
ggcatcggcggcacggccgggatggtgcacccgtccacggggtacatggtggcgcgcacg
ctggcgaccgcgcccatcgtggcggacgccatcgtgcggttcctcgacaccggcgacggc
agggtcggcctcgccggggacgcgctctccgcggaggtgtggaagcagctgtggccggcc
aacaggcggcggcagagggagttcttctgcttcggcatggacgtcctgctcaagctggac
ctcgacggaacgcgccgcttcttcgacgccttcttcaacctcgagccgcactactggcac
ggcttcctgtcgtccaggctgtttctgccggagctcttgatgttcgggctcgcgctgttc
gggaacgcctccaacacgtcgaggctggagatcatggccaagggcaccgggcctctgggc
aagatgattggcaacttgatacaggacagagatgggtga
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