Panicum virgatum (switchgrass): 120654356
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Entry
120654356 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase III subunit 2-like isoform X1
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120654356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120654356
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120654356
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
120654356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
120654356
NCBI-ProteinID:
XP_039787808
LinkDB
All DBs
Position
1N:411922..433954
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AA seq
1151 aa
AA seq
DB search
MTVPPADDAAKKELPPPSYRSLAAPVATPVDKFALLPAFLKVRGLVKEHIDSFNYFITRG
IRNIVQANNRIEARNDPNIYLRYTNVYVGTPSVQVDYKIENITPHFCRLTDRTYSAPIRV
DIEYTVGKQHEPQHKKNILIGYMPIMLRSYTCVLHGRDEAELARLGECPLDPGGYFIVKG
TEKVILIQEQLSKNRIIIDTDSKGRVIASVTSSTHEIKSKTVITMDKEKIYLQLNQFTKP
IPIIVVMKAMGMESDQEVVQMVGRDPRYGDLLFPSIQECASERIYTQQQALQYMDEKVTY
PGAGNQKEGRSKSILRDVFIAHVPVKNGNFRQKCIYTGVMLRRMMDAILNADTFDDKDYV
GNKRLELSGQLISLLFEDLFKTMNSQAVELMNKNSDKTRSSPSDFSQLIKHEAITSGLER
AISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWG
MLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCKSLGVEDLTLLSGEEIHAPGSF
LVMFNGLILGKHRQPQTFANAMRELRRSGKIGEFVSIFANEKQHCIHIASDGGRVCRPLI
IADKGISRVKECHMKELRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHVDQDDVERS
SITHIEIEPLSILGVVSGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLL
VYAQRPLLTTKTIELVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIAM
KKYTVMKENYGDGVSDRIVKPQRDKDGVLLMQNMRALDEDGIAAPGQIIRNHDVYVNKQS
PKIVDRRGAGAPLKDMDYKNSPAIYKGVDGETTVVDRVMLCSDTNEKLSIKCIIRHTRRP
EVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELIGGKA
GLSCGRFHYGSAFGEPSGNADKVQDISNTLIKHGFSYNGKDFLYSGVLGHPLEAYIFMGP
IYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFE
RLLLSSDPYQVQVCRKCGLLGYYNYKLKTSYCSMCKNGENMAKMRLPYACKLLFQELQAM
NVVPRLKLTEG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgcccccagcggacgacgcggccaaaaaggagctgccgccaccgtcctatcgc
tctctggccgccccggtcgccacccccgtcgacaagttcgcgctcctcccagcattcctc
aaggtccgagggctcgtcaaggagcacatcgactccttcaactacttcatcaccaggggg
atcaggaacatcgtccaggcaaacaatcgaattgaggcgcgcaatgaccccaacatttac
ctcaggtacaccaacgtctatgttggcacgccctcagttcaagtggattacaaaatcgaa
aatatcacgccccacttttgccgccttactgaccgcacttattctgctcctataagagtt
gatattgaatataccgtggggaagcagcatgaaccgcagcataagaaaaacattctcatt
ggctacatgcccattatgcttagaagttatacatgtgttctgcatggaagggatgaagct
gaactagcaagactcggtgagtgccctcttgatcctggtggctacttcattgtcaaagga
actgagaaggtcattttaatacaagaacagctatcgaagaatcgtattattatcgacacc
gatagtaaaggaagggtgattgcatctgttaccagcagcacacatgaaattaaaagtaag
acggtgattactatggataaggaaaagatctatctacagctgaatcaattcacgaaaccg
attccaataatagtggtcatgaaagctatgggaatggaaagtgatcaagaggttgtacaa
atggttggaagagatccaagatacggagacctcttattcccatctattcaggaatgtgcc
tcagagagaatatatacacagcaacaagccctgcagtacatggatgagaaggtcacgtat
cctggtgcaggaaatcagaaggagggtcggtcaaaatcaatcctacgtgatgtatttatt
gcacatgtgccggttaagaacgggaacttccgacaaaaatgtatatacactggtgtgatg
ttaaggcgcatgatggatgcaatcttgaatgctgacacctttgatgataaggattatgta
gggaataagaggctggaattgtctggtcaactaatatccctgctttttgaggatttgttc
aaaacaatgaattcccaagctgtagagctcatgaacaaaaatagcgacaagactcgttct
agtccttcagattttagccagttgataaagcatgaagccataacctctggtttggagagg
gctatttctacaggaaattgggatatcaaaaggtttcggatgcataggaaaggtgtatca
caggttctttctaggctatcgtacatggcatcgttaggctacatgacacggataacaccg
cagtttgagaagactaggaaaacaagtgggccacgtgctttgcaacctagtcagtggggc
atgctttgcccatgtgatactcctgaaggagaagcttgtggattaacaaaaaatttagct
ctattgactcacgtgacaacagatcaagaggaaggcccgctgatgaatctgtgtaagagt
cttggcgtggaagatttaacgcttctttctggagaagaaatacatgcaccaggttcattt
ttggtgatgttcaatggattaatactgggaaaacataggcagcctcagacatttgctaat
gctatgagagagttgcgtcgatcaggcaaaattggagagttcgtaagcatttttgcaaac
gagaagcagcattgcattcacattgcctctgatggtggtcgtgtatgtcgcccacttata
attgctgataaggggatatcaagggtcaaagagtgtcatatgaaagaactaagggatggt
attcgttctttcgatgatttcctgcgtgatggattgatcgaatatcttgatgtcaatgaa
gagaacaatgcgttgattgcattgtatgaacatgtggatcaagatgatgttgaaagaagc
agcatcacacatattgaaatagagccattgtctatcttaggagttgtatccggacttatt
ccttatccacaccataaccaatctccgcgtaatacttaccagtgtgcgatgggtaagcaa
gctatgggaaatattgcatataatcagttgttcagggcagattcactactctacttactg
gtgtacgcacaacgtccactgctaacaacaaaaacaatcgagttggtgggatatgacaag
cttggtgctgggcagaatgccactgttgctgtcatgggttatagtggatatgatattgaa
gatgcaattgtaatgaataaatcatcccttgatcgaggttttggtcgttgcatagcaatg
aaaaagtatacagttatgaaggagaactatggagatggtgtctctgacaggattgttaaa
ccgcaaagagataaagatggtgttttgttaatgcagaatatgcgggcacttgatgaggat
ggtattgctgcacctggccaaataattcgcaatcatgatgtctatgtgaacaagcaaagt
cccaaaattgtagatagaagaggtgctggtgcaccattaaaagacatggactacaagaac
tcaccggccatttacaaaggtgttgatggcgagactactgttgtagatcgtgtaatgctt
tgttcagatacaaatgagaaactgtctattaagtgcattatccgccatacaaggaggcca
gaggttggtgataaatttagtagcagacatgggcagaaaggtgtttgtggtaccattgtt
cagcaagaggacttccccttctctgagaggggaatatgccctgatttaattatgaatcca
catggattccctagtcgaatgactataggtaaaatgattgaacttattggtggaaaggct
ggtttgtcttgtggtcgattccattatggcagtgcatttggtgaaccaagtggtaatgct
gataaagttcaagacataagcaatactctaatcaagcatggcttcagctataacggaaaa
gatttcttgtactcaggtgttctaggtcatcctctggaggcatacatcttcatgggtcca
atctactatcagaaactgaagcacatggttcttgataagatgcatgctcgagctagtgga
ccacgagtgttgttgactaggcagcctactgaagggcgaagtcgtgatggaggtctccgt
cttggtgaaatggagcgtgattgtttgattgcgtatggtgctagcatgctgatctttgaa
cgtctgctactatccagtgatccatatcaagtccaggtttgcagaaaatgtggcttgttg
gggtactacaactataaactgaagacttcgtactgttcaatgtgtaagaacggagaaaac
atggccaagatgaggctgccatatgcctgcaagcttttgttccaggaattgcaagcaatg
aatgtcgttccccgattaaagctaaccgaaggataa
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