Panicum virgatum (switchgrass): 120654923
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Entry
120654923 CDS
T07260
Name
(RefSeq) putative multidrug resistance protein
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120654923
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120654923
04147 Exosome [BR:
pvir04147
]
120654923
04090 CD molecules [BR:
pvir04090
]
120654923
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120654923
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120654923
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120654923
CD molecules [BR:
pvir04090
]
Proteins
120654923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_29
Zeta_toxin
AAA_16
AAA_21
RsgA_GTPase
AAA_22
AAA_15
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
120654923
NCBI-ProteinID:
XP_039788535
LinkDB
All DBs
Position
1N:complement(7236535..7246042)
Genome browser
AA seq
1239 aa
AA seq
DB search
MGKDDGPPEAAKKAAPALRSFASVLMHADGVDVALMVLGLVGAMGDGMSTPVMLLITSRI
FNDLGSGPDVLQQFSSKINENARNLLFLALGNWVVAFLEGYCWARTAERQASRMRARYLR
AVLRQDVEYFDLKVGSTSEVITSVSNDSLVVQDVLGEKVPNFVMNCSMFVGSYAVGFALL
WRLTLVALPSVLLLIIPGFTYGRILIGLARRIREQYTRPGAIAEQAVSSVRTVYSFVAER
ATMAQFAAALEESARLGIRQGLAKGVAIGSNGITFAIWSFNVWYGSRLVMYHGYKGGTVF
AVSAAIVVGGLALGSGLSNVKYFSEASSAAERVQEVIRRVPKIDSESSAGEELPNVAGEV
EFKNVEFCYPSRPETPIFASFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSSGEVS
LDGVDIRRLRLKWLRAQMGLVSQEPALFATSIRENILFGKEDATEEEVVAAAKAANAHNF
ISQLPQGYATQVGERGVQMSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEA
LDLASVGRTTIVIAHRLSTIRNADTIAVMQYGEVKELGSHDELIANESGLYTSLVRLQQT
SDSRETNEVGGTGSGQSSSHSLSRRFSAASRSSSVRSMGDAENDDSTDKPKLPVPSFRRL
LMLNAPEWKQALIGSFSAVVFGGIQPAYAFAMGSMISIYFLTDHNEIKDKTRTYALIFVG
LAVLSFLINIGQHYNFGAMGEYLTKRVREQMLAKILTFEIGWFDRDENSSGAICSQLAKD
ANVVRSLVGDRMALVIQTVSAVLIACTMGLVIAWRLALVMIAVQPIIIVCFYARRVLLKS
MSKKSIQAQSESSKLAAEAVSNLRTITAFSSQDRILSLFDQAQDGPRKESIRQSWFAGLG
LGTSMSLMTCTWALDFWYGGRLMAEHHITAKALFQTFMILVSTGRVIADAGSMTTDLAKG
ADAVASVFAVLDRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKRFSLSIQ
PGKSTALVGQSGSGKSTIIGLIERFYDPLRGVVKIDGRDIKTYNLRALRRHIGLVSQEPT
LFAGTIRENIVYGTETATEAEIENAASSANAHDFISNLKDGYETWCGERGVQISGGQKQR
IAIARAILKNPAILLLDEATSALDSQSEKVVQEALDRVMVGRTSIVVAHRLSTIQNCDQI
TVLEKGIVVEKGTHASLMAKGPSGTYFGLVSLQQGGNQH
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggacgacgggccgccggaggcggccaagaaggcggcgccggcgctgcggtcg
ttcgcgtcggtgttgatgcacgcggacggtgtggacgttgcgctcatggtgctcggcctg
gtgggcgccatgggcgacggcatgtccacgcccgtcatgctcctcatcaccagccgcatc
ttcaacgacctcggcagcgggccggacgtcctccagcagttcagctccaagatcaacgag
aacgcgcggaacctcctcttcctggcgctcggcaactgggtggtggcgttcctagagggg
tactgctgggcgcgcacggcggagcggcaggcgtcgcggatgcgggcgcggtacctgcgg
gcggtgctccggcaggacgtggagtacttcgacctcaaggtgggctccacgtcggaggtg
atcaccagcgtctccaacgacagcctggtggtgcaggacgtgctgggcgagaaggtgccc
aacttcgtgatgaactgctccatgttcgtcggcagctacgccgtcgggttcgcgctgctg
tggcggctgacgctggtggcgctgccgtcggtgctgctgctcatcatcccgggcttcacg
tacggccgcatcctcatcggcctcgcgcgccggatcagggagcagtacacgcgccccggc
gccatcgccgagcaggccgtctcctccgtgcgcaccgtgtactcgttcgtggcggagcgg
gccaccatggcgcagttcgccgccgcgctcgaggagtcggcgcggctcgggatcaggcag
gggctcgccaagggggtcgccatcggcagcaacggcatcaccttcgccatctggtccttc
aacgtctggtacggcagccgcctcgtcatgtaccacggctacaagggcggcaccgtcttc
gccgtctccgccgccattgtcgtcggcggcctagctctggggtcggggctgtcgaacgtc
aagtacttctcggaggcgagctcggcggcggagagggtgcaggaggtgatccggcgggtg
cccaagatcgactccgagagcagcgccggcgaggagctgcccaacgtcgccggcgaggtg
gaattcaagaacgtggagttctgctacccgtcgcggccggagaccccaatcttcgcgagc
ttcaacctgcgcgtcccggcagggcgcacggtggcgctagtcggcggcagcgggtccggc
aagtccaccgtgatcgcgctgctggagcggttctacgacccgtcctccggcgaggtgagc
ctggacggcgtggacatccggcggctgcggctcaagtggctgcgcgcgcagatggggctc
gtcagccaggagccggcgctgttcgcgacgtccatcagggagaacatcctgttcggcaag
gaggacgcgacggaggaggaggtcgtcgccgcggccaaggcggccaacgcccacaacttc
atctcccagctgccgcagggctacgccacgcaggtgggtgagcgtggtgtccaaatgtct
ggaggtcagaagcagaggattgctattgccagagcaatccttaagtcacctaagatcctc
ctccttgatgaagccacaagcgcattggacacagagtcggagcgtgttgtgcaagaggca
cttgacctggcctccgtgggtcggacaactattgtcattgcacatcggctctccacaatc
cggaatgctgacacgattgctgtgatgcagtatggtgaggtcaaggagctgggttcccat
gatgagctcattgccaatgagagtggcctctacacatctcttgtccgccttcagcagacc
agcgattcaagggagactaatgaggttggtggaactggaagtgggcaatctagcagccac
agcttgagcaggaggttctctgcagctagcaggtcaagctcagtacggtcgatgggtgat
gcagaaaatgatgatagtaccgacaagccaaagcttcccgtcccatcattcagaaggtta
ctgatgctgaatgcaccagagtggaagcaggctctgataggaagcttcagtgctgttgtg
tttggaggcatacagcctgcatatgcatttgccatgggaagcatgatctcaatctacttc
ttgacagaccacaatgagatcaaggacaaaacaaggacctatgcactcatctttgttggt
ctagcagtgctctcattcttgatcaatattgggcaacattacaacttcggtgccatgggg
gaatacctcaccaagagagtcagagaacagatgcttgcaaaaatccttacttttgagatt
gggtggtttgaccgtgacgagaactccagtggtgccatatgctcacaacttgccaaggat
gccaacgttgtgaggtcacttgtgggtgatcgaatggctctggtgatccagacagtttct
gcagttcttatagcctgcaccatgggcctggtgatagcttggcgtttggcccttgtcatg
atagcagtgcaacccattatcattgtttgcttttatgcacgccgcgttttactgaagagc
atgtccaagaaatcaatacaggcacaatctgaaagtagcaagctagcagctgaggctgta
tccaatctccgcaccatcactgctttctcatcccaggaccgcatcctaagcctctttgat
caagcacaggatgggccacgcaaggaaagcatcagacagtcatggttcgcaggactgggc
cttggcacctccatgagccttatgacatgcacatgggccctcgatttctggtatggtggc
aggctcatggctgagcatcacataactgccaaggcactcttccaaaccttcatgattcta
gtaagcacagggcgtgtgattgcagatgcaggtagcatgactacagaccttgctaagggt
gccgatgcagtcgcttcagtgtttgctgttcttgacagagaaactgaaatcgaccctgac
aaccctcaggggtacaagccagaaaaactaaaaggtgaggttgacattagaggagttgac
tttgcttacccttcaaggccagatgtgattatcttcaagaggttctccttgagcatccag
ccaggcaagtcaacagcccttgttgggcaaagtggttctggcaagtcaacaatcattggg
cttatagagaggttctatgacccacttcggggggtagtgaagattgatggtagagacatc
aaaacatacaatctcagagccctgaggcgtcacattggattggtcagccaggaaccaaca
ctatttgcaggtacaataagagaaaatattgtgtatggtacagaaacagcaactgaagca
gaaattgagaatgcagcaagctctgcgaatgcacatgactttattagcaacctcaaggat
ggatacgagacatggtgtggtgagaggggtgttcagatttcaggaggccagaaacaacgc
attgcaattgcacgtgccatcctgaagaaccctgcaatactgctactggatgaagcaaca
agtgcactggacagccagtctgagaaggtggtacaagaggcattagaccgagtgatggtt
ggcaggacaagcattgtggtggcgcataggctcagcacaatccagaactgtgaccagatc
actgtgcttgagaagggaattgttgtggagaagggcacacatgcatcccttatggccaag
ggtccctctggaacatactttggattggtcagtttgcaacaaggaggaaatcagcattga
DBGET
integrated database retrieval system
