Panicum virgatum (switchgrass): 120654925
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Entry
120654925 CDS
T07260
Name
(RefSeq) lycopene beta cyclase, chloroplastic-like
KO
K06443
lycopene beta-cyclase [EC:
5.5.1.19
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120654925
Enzymes [BR:
pvir01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.19 lycopene beta-cyclase
120654925
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Motif
Pfam:
Lycopene_cycl
Pyr_redox_2
DAO
FAD_binding_2
FAD_oxidored
Thi4
NAD_binding_8
FAD_binding_3
Pyr_redox
HI0933_like
NAD_binding_9
3HCDH_N
Pyr_redox_3
2-Hacid_dh_C
GIDA
Motif
Other DBs
NCBI-GeneID:
120654925
NCBI-ProteinID:
XP_039788538
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Position
1N:complement(7268935..7270810)
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AA seq
519 aa
AA seq
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MSRQLITTTSGSGLPGSTAPEFPTSHRPMAAAALLLRTHHHPCKPPPPAARAPALCRAAA
GTSAGPASAAALRSLAPPTRPELLSLDLPRYDPSRARPVDLAVVGGGPAGLAVAQRVAEA
GLSVCAVDPSPALVWPNNYGVWVDEFEAMGLSHCLDTVWPSASVFIDDGRAKSLDRPYAR
VARRELKSAMMDRCVANGVLFHQAKVAKAVHYDASSILICDDGVSIPATIVLDATGFSRC
LVQYDKPYNPGYQVAYGILAEVDGHPFDIDKMLFMDWRDSHLAEGSEIKERNRRIPTFLY
AMPFSPTRIFLEETSLVARPGLAMDDIQERMAARLRHLRIRVRSVEEDERCVIPMGGPLP
VLPQRVVGIGGTAGMVHPSTGYMVARTLATAPIVADAIVRFLDTGDGTAGLAGDALSAEV
WKQLWPANRRRQREFFCFGMDVLLKLDLEGTRRFFDAFFNLEPHYWHGFLSSRLFLPELL
MFGLALFGNASNTSRLEIMAKGTLPLGKMIGNLIQDRDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagccggcagcttatcaccaccacctcaggctcaggattgcccggctccaccgcgccc
gaattccccacctcccaccgccccatggccgccgccgccctcctcctccgcacccaccac
cacccctgcaagccgccgccgcccgcggcgcgcgcgcccgccctctgccgcgccgcggcg
gggacgtcggccgggccggcgtcggccgcggcgctgcggtcgctggccccgcccacgcgg
ccggagctgctgtccctcgacctgccccgctacgacccgtcgcgcgcccgccccgtggac
ctcgccgtggtgggcggcgggcccgcgggcctcgccgtggcgcagcgcgtggcggaggcc
ggcctgtcggtgtgcgccgtcgacccgtccccggcgctcgtgtggcccaacaactacggc
gtgtgggtggacgagttcgaggccatgggcctctcccactgcctcgacaccgtctggccg
tcggcctccgtcttcatcgacgacggccgcgccaagtcgctcgaccgcccctacgcccgc
gtcgcgcgccgcgagctcaagtccgccatgatggaccgctgcgtcgccaacggcgtcctc
ttccaccaggccaaggtcgccaaggccgtccactacgacgcctcctccatcctcatctgc
gacgacggcgtctccatcccggccaccatcgtgctcgacgccacggggttctcgcgctgc
ctcgtgcagtacgacaagccctacaaccccgggtaccaggtcgcctacggcatcctcgcc
gaggtggacggccacccgttcgacatcgacaagatgctcttcatggactggcgcgactcg
cacctcgccgagggctcggagatcaaggagcgcaaccgccgcatccccacgttcctctac
gccatgcccttctcgcccacgaggatcttcctcgaggagacgtcgctcgtcgcgcgcccg
ggcctcgccatggacgacatccaggagcgcatggcggcgcggctcaggcacctgcggata
cgcgtccggagcgtcgaggaggacgagcgctgcgtcatccccatgggcgggccgctgccc
gtgctgccgcagagggtggtcggcatcggcggcacggccgggatggtgcacccgtccacg
gggtacatggtggcgcgcacgctggcgaccgcgcccatcgtggcggacgccatcgtgcgg
ttcctcgacaccggcgacggcacggccggcctcgccggggacgcgctctccgccgaggtg
tggaagcagctgtggccggccaacaggcggcggcagagggagttcttctgcttcggcatg
gacgtcctgctcaagctggacctcgagggaacgcggcgcttcttcgacgccttcttcaac
ctcgagccgcactactggcacggcttcctgtcgtccaggctgttcctgccggagctcttg
atgttcgggctagcgctgttcgggaacgcctccaacacgtcgaggctggagatcatggcc
aagggcaccttgcctctgggcaagatgattggcaacttgatacaggacagagatgggtga
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