Panicum virgatum (switchgrass): 120655727
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Entry
120655727 CDS
T07260
Name
(RefSeq) ABC transporter B family member 11-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120655727
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120655727
04147 Exosome [BR:
pvir04147
]
120655727
04090 CD molecules [BR:
pvir04090
]
120655727
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120655727
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120655727
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120655727
CD molecules [BR:
pvir04090
]
Proteins
120655727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
AAA_29
AAA_16
Zeta_toxin
AAA_21
APS_kinase
RsgA_GTPase
DUF87
AAA_30
AAA_15
Motif
Other DBs
NCBI-GeneID:
120655727
NCBI-ProteinID:
XP_039789621
LinkDB
All DBs
Position
1N:complement(36708274..36715713)
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AA seq
1235 aa
AA seq
DB search
MHRLFAFADRRDAAMMAMGAAAAFANGLAMPLLTFLMGDLIDAFGAADRARVVHVVSKVA
VRFVYVAIASGVAAFLQVSCWMVTGERHAARIRGLYLEAILRQDISFFDVETSTGEIIER
MSSDTVLIQEASGEKVGKFLQLISTFLGGFIIAFARGWLLSLVMLSSIPLVVISAGAMSL
VISKLTNRSQMAYAEAGKVVEQTIGSIRTVASFTGEKRAIDRYNEFLRTSYRSTVQQGIA
MGLGIGSLLLIVFCSYALAVWYGARLIIEKGYTGGYIINVIMAIMTGAMALGNCSSCLSA
FVSGRIAAYKMFATIYRSPEIDVHDKSGLVLENFMGDVELRDVHFSYPTRPEQSIFSGFS
ITIRTGTTMALVGESGSGKSTVISLVERFYDPQSGEVLLDGVNLKLLKLSWIRQKIGLVS
QEPILFTTTIRENIRYGKKGASEEEIRSATMLANATKFIDKLPNGLDTMVGEQGTQLSGG
QKQRIAIARAILKDPKILLLDEATSALDAESEHVVQEALNNIMVNRTTIIVAHRLSTVKN
ADTISVLHRGQLVEQGSHAEMIKNSNGAYSQLIRLQEVNAKRNGAYADSSNRTRTAFYTA
KNNISDHSSRKPSFERSMSINSPPDGSRRNSNTFSSNEHEKMGEDDAKLGKKVLRRLLHL
HKPETKILVLGCIAAAANGAILPVFGLMISSAIKTFYEPPHKLQKDSVFWAEMYVTLGVL
SILIMPVQFSMFYMAGGKLIERIRALSFAQVVYREIGWFDDPLNSSGAIGSRLSTDAASI
RGIAGDVLALLVQNISTAIVGIVIAMVANWKLACIVVCFVPCVFAQSFAQARFMRGFSAD
AKKTYEQASTIASDAIGNIRTVASFCIEERIVENYRKKCEGPVKQALRQGVISGAGYGFS
FAMLFCFYAISFYVGALFIHDGTADVGQVFKVFFALTMMAVGVSQSSSMARDFSKVEDAA
VSIFELIDRKSMIDASSEEGTILDTVQGDIELQHVTFKYPARNDVQIFRDLCLRIPSGTT
VALVGESGSGKSTVISLIERFYDPDSGVILLDGKNLKSLKLSWLRQQVGLVGQEPVLFND
TIRANIAYGKEEEVSEEEIIAAAEAANAHRFISTLSSGYDTSVGERGVQLSGGQKQRIAI
ARAIVRDPKVLLLDEATSALDAESEHTVQEALDRVMVGRTTVVVAHRLSTITGADKIAVI
KNGIVAEEGQHEQLLRAFPGGAYASLVALQSSTSS
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgcaccggctgttcgcgttcgcagaccggcgggacgcggcgatgatggccatgggcgcc
gccgcggcctttgccaacgggctcgcgatgccgttgctcaccttcctcatgggcgacctc
atcgacgcgttcggcgccgccgaccgcgcccgcgtcgtgcacgtcgtctctaaggttgcc
gtccgatttgtatatgtagcaatagcttctggagtggctgcctttcttcaggtgtcatgc
tggatggtgactggagaaaggcatgctgcacgtattcgagggttgtaccttgaggctata
ctaaggcaagatatttctttctttgatgtggagacatctactggagaaattattgaaagg
atgtctagtgacacagtgttgatccaagaagccagtggagaaaaggttgggaagtttctc
cagctgatatcaacatttctaggtggattcataatcgcatttgcaagaggctggcttctg
tcccttgtcatgttgtcaagtatccctctagttgttatttctgcaggagccatgtcactt
gtcatatcaaagctcacaaatcgttctcagatggcctatgctgaagctgggaaagtggtt
gaacagacaattggatcaatcagaactgtggcatctttcactggtgagaagagagcaatt
gatagatacaatgagtttttaagaacatcgtacagatcaacagttcagcagggaattgct
atgggactaggaattggttcacttttgcttattgttttctgcagctacgcattggctgta
tggtatggtgcaaggctaattattgaaaaggggtacaccgggggatatatcatcaatgtg
ataatggccatcatgactggtgcaatggctcttgggaattgttcttcatgcttaagtgct
tttgtatcaggacggatcgcggcttacaaaatgtttgcaacaatctaccgatcacctgaa
attgatgtgcatgataagagtggccttgtattggagaacttcatgggtgatgttgagctt
agggatgtccatttcagttaccctacaaggccagagcagtcaattttcagtggcttctct
atcaccattaggactggcacaacaatggcattagttggggagagtggaagtggaaagtct
actgtgattagcttggtagaaaggttctacgatccacaatcaggtgaagttctcctagat
ggtgttaatttgaagctgttaaaacttagttggataagacagaaaatagggcttgtcagc
caagagccaattcttttcacgacgacaataagggaaaacatcaggtatggaaagaaaggt
gcatctgaggaagaaatcaggagtgctactatgcttgccaatgccacaaagttcattgac
aagttaccaaatggactagatacaatggttggtgagcaaggcactcagctttctggtgga
cagaaacaaagaattgcaattgcaagagcaattttgaaggaccctaagatactacttctt
gatgaagctacaagtgcacttgatgctgagtctgagcatgtagttcaggaggcacttaat
aatatcatggtgaacaggaccaccataattgtagcgcatcgcttgagcactgtgaaaaat
gctgacacaatatcagtgctacaccgtggacagcttgttgaacagggatcacatgctgag
atgattaagaattccaatggagcatactctcaactaatacggcttcaggaggtcaacgct
aaaagaaatggggcctatgcagacagctccaacaggacacggacagcattttatactgca
aaaaacaatatcagtgaccatagtagcagaaagccatcctttgagagatccatgagtata
aattcaccaccggatggaagcagaaggaattcaaacacattctcatcaaatgaacatgag
aaaatgggtgaggatgatgcgaaattggggaagaaagtcctcagacgactactccacctc
cataagcccgaaactaaaatccttgtattaggatgcattgcagctgccgccaatggtgct
atacttcctgtgtttggcctcatgatttcaagtgccatcaaaacattttacgaaccacca
cacaaactgcaaaaagattcagtgttctgggcagagatgtatgtgacactgggtgtgctc
tccatccttatcatgccggttcaattctctatgttctacatggcaggtggaaagcttatt
gagcgcatacgtgcattatcatttgctcaggttgtttaccgggaaataggatggtttgat
gaccctctgaatagcagcggtgcaataggctctaggttatccacagatgcagcatctatc
agaggtattgcaggagatgtccttgcattgttagtgcaaaacataagcacagctattgtt
ggcatcgtgatagccatggttgcaaactggaagctagcatgcatagttgtatgctttgtt
ccatgtgtatttgcacaaagctttgctcaagcaaggttcatgaggggtttcagtgccgat
gccaagaaaacttatgaacaagcaagcacgattgctagtgatgccattggtaatatcaga
actgttgcttccttctgtattgaagagaggatagttgaaaactaccgaaagaaatgtgaa
ggccctgtgaagcaagcacttcgacaaggggttataagtggtgccggctatggattctcg
tttgctatgctgttctgcttttatgctatatctttttatgttggagctctctttatacac
gatgggacagcagacgttgggcaagtcttcaaggtcttcttcgctctaaccatgatggct
gttggggtttcgcaatcgagttccatggctcgtgattttagcaaagtggaagatgcagcg
gtttccatttttgagcttattgatcggaaatccatgattgatgcaagctctgaggaggga
acgatacttgacacagtgcagggtgatatagagttgcagcacgttaccttcaagtaccca
gctcggaatgacgtgcagatcttcagagacttgtgcttgagaatcccttctggcacgact
gttgcacttgtcggagaaagcggaagtgggaaatcgacggtgatatcactgatagagagg
ttctacgaccctgactccggcgtgatccttctagatggcaagaatctgaagagcctcaag
ctcagctggctaaggcagcaggtggggctagttgggcaggaacccgtcctcttcaacgac
acaatcagggcaaacatcgcttacggcaaggaggaggaggtctccgaggaagagatcatc
gccgcagcggaggcggccaacgctcataggtttatctctaccctctccagcggttacgac
accagcgtcggcgagcgcggtgtgcagctctctggcgggcagaagcagcggatcgccatc
gcaagggcgatcgtcagggaccccaaggtgctgcttctagacgaggcgaccagtgcgctg
gatgctgagtcggagcacaccgtgcaggaggcactggacagggtgatggtgggcaggacg
accgtggtcgtggcgcaccggctgtcaactataaccggagcggacaagatcgccgtcatc
aagaatggcatcgtcgctgaggagggccagcacgagcagctgctacgtgctttccccggt
ggggcgtatgcgtctcttgttgcgctgcagtctagcacaagttcgtga
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integrated database retrieval system
