Panicum virgatum (switchgrass): 120656211
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Entry
120656211 CDS
T07260
Name
(RefSeq) protein PHYLLO, chloroplastic-like isoform X1
KO
K14759
isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / o-succinylbenzoate synthase [EC:
5.4.4.2
2.2.1.9
4.2.99.20
4.2.1.113
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01240
Biosynthesis of cofactors
Module
pvir_M00932
Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120656211
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
120656211
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.113 o-succinylbenzoate synthase
120656211
4.2.99 Other carbon-oxygen lyases
4.2.99.20 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
120656211
5. Isomerases
5.4 Intramolecular transferases
5.4.4 Transferring hydroxy groups
5.4.4.2 isochorismate synthase
120656211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MR_MLE_C
TPP_enzyme_M_2
Abhydrolase_6
Abhydrolase_1
TPP_enzyme_N
Hydrolase_4
TPP_enzyme_C
Thioesterase
Abhydro_lipase
Abhydrolase_2
Abhydrolase_11
MenC_N
Abhydrolase_3
Ndr
DUF676
Esterase
Motif
Other DBs
NCBI-GeneID:
120656211
NCBI-ProteinID:
XP_039790177
LinkDB
All DBs
Position
1N:complement(47275573..47295281)
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AA seq
1527 aa
AA seq
DB search
MKYDKESSSIEDKPGSYYFFIPLVELSEFDNCSILSSTMIWDDSVSHTFEDAVSLFESCF
NQIQNSYDPLDSICRKGLVPSYISRDAHLSETGNPQLVYLDTELLATIDAKGIPLTLDKF
LTSDQSFVRFSPEFLFCSNMELYLQQNETESFIKRCSNINLAWASLIVEECVRLGFTYFC
IAPGSRSSPLALSATCHPLTTCISCYDERSLGFHALGYGRGSRKPAVVITSSGTAVSNLL
PSVVEASQDFIPIILLTADRPPELHDAGANQAINQVNHFGTFVRYFFNLPPPSDQIHARM
VLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNRDWNLDCLRGLDKWFTNIEPYTRYLT
MKTVSAFGNYSCSVMEILQIIEKAEQGLLLVGALHTDDDMWAVALLAKHLSWPIATDILS
GLRLRKVVNLFPQFDKSILFIDHIDQILLSDSAKNWISPDVIVQIGSRITSKRVGMFLET
CSPFSYILIDRHPCRHDPSHVVTHRIQASIVEFAASLCRCTFERKKSRWTDILMVLNSVV
AQEIMFQIHSKWSLTEPYVAHVIGESLSGDAIMFVGNSMVIRDLDMFGKGWTDYTSNGNS
LMMHHFLEFVGTSVAGNRGASGIDGLLSTAIGFAVGSNKHVFCVVGDISFLHDTNGLALL
NQRARRKPMTIIVVNNHGGAIFSLLPIAKNTSPQILKKFFYTSHDISISNLCAAHRVKHL
LVQTKAELHDALVKSKAEQIDCVVEVDNSIDSNADFHRIMNKFSAYSTTRYLDYLLGDPC
PKSELDAMPVYIIHGAEYMLYRIQLSAPRTSALSDGRFSHEGFILKLCMDDNIAGFGEVA
PIEIHEEDLLDVEEQLRFLFHMMKDSVLDVIPLLRGSFSNWIWTSLGIPPSSIFPSVKSG
LEMAILNLLASQRKCGLSKFLAGSDPLVRDQNSYAGIEICALVDCNGTPMEVAHAVAKLV
AEGFTTVKLKVGRRESPIEDAAVLHKIREVVGYKINIRVDANKKWTYEQAVEFGYRAKSL
RLEYIEEPVSSVNDLIKFCDKSGLPVALDETIDNLKGDVIPKLHQFVHPGIVALVIKPSV
VGGFEKAAHIAKWAQMHDKMAVISSAYESSVGLASYIQLAHYVDQQNSIVSRIKNKDTCG
VVAHGLGTYQWLREDVSEKELNIHATPLGDGIRASVEDACGYLHHLSINNNKIERTYNEE
KMRSYSIQVDVDDCSYLVKLQEAGDHINEKVVLLLHGFLGSSDDWVPMMKALSPSARVIA
VDLPGHGESQILQQHVENSEQFPVTVQSLVDLLLKLICQITDGEVVVVGYSMGARIALHM
ALNQVHLVTFSIFIFCSHFFLMLILSWLWQNPRQIRGAVIISGSPGLKDEESRRRRIAID
KSRAKFLVSCGLECFLETWYSAKMWTSLREHPKFNSVVRTRSKHKDIKALAKVLADSRVG
RQRPLWEDLKHLKRPLLIVAGEKDTKFKDISQRMCSEITQHGECGCDERDGDELCDMIVI
PDAGHAVHVENPLPLVRAVRKFLQKLH
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgacaaggaatcgtcgtccatagaggataaacctggctcttattacttcttc
atccctctggttgagttgagcgagtttgataactgttccattttatcgtcaaccatgatt
tgggatgactctgtttctcacacatttgaggatgcagtttctttgtttgaatcttgcttt
aatcagatacaaaatagctatgatcctttggatagcatttgtcgcaaaggtttggtacca
agttacatttctagagatgcacatttgtcggagactgggaatcctcagttggtgtatttg
gatacagaactgctcgccacaatagatgcaaaaggtatccccttaaccttggacaagttt
ttgacttctgatcagtcatttgttagattttcaccagagttcctcttttgttcaaacatg
gagttatacttgcaacaaaatgagacagaatctttcatcaagcgctgctctaacataaat
ttggcatgggcatcccttatagttgaagaatgtgttagacttggtttcacgtacttctgt
atagctccagggtcgagatcatccccccttgcactttctgctacatgccatcctttgaca
acatgcatatcatgttacgatgaacggtcacttggatttcatgctcttggctatgggaga
ggttctaggaagccagcagtagtaatcacatcatcaggaactgctgtatcaaatcttctt
ccttcagtggttgaggcaagtcaagatttcataccaattatattactcacagctgatcgt
cctcctgagttgcatgatgctggagctaaccaagccatcaatcaggtcaatcattttggt
acctttgtaagatatttttttaatctccctccgcccagtgaccaaattcacgcaagaatg
gttctcacaacacttgactcagcagcctactatgcaatgcaagctccacaaggcccagtg
catataaattgtgcttttagagaacctttagattacaccaatcgagattggaatcttgac
tgtttgagaggtttggataagtggtttacaaatattgagccgtataccagataccttaca
atgaaaacggtttctgcattcggtaattattcttgttcagtaatggagattctgcagatc
atagagaaggcagaacaagggcttctattagttggtgctcttcatacagatgatgacatg
tgggccgtggctttgctagctaagcacctctcctggccaattgctactgatattctgtct
ggactacgattgcggaaagttgtaaatttgttcccacagtttgataagagcattttattt
atagaccacatcgatcaaattctattgtctgattctgctaaaaactggataagcccagat
gtcattgttcagattggtagtcgtattactagcaaacgagtgggaatgtttcttgagact
tgctccccattttcctacattttgattgataggcatccatgccgtcatgatccatcacat
gttgtcactcacagaatacaagctagtatagtggaatttgctgctagcttgtgccggtgt
acttttgaaaggaagaaaagcagatggacagatattttgatggttcttaattcagtggtt
gctcaagagataatgtttcagatacattcaaaatggtcacttacagaaccatatgttgct
catgtaattggggagtcactttctggtgatgctatcatgtttgttggaaacagcatggtc
atccgagacttagacatgttcggcaagggctggactgattacacttcaaatggaaatagc
ctgatgatgcatcattttctggagtttgttggcacatcagtggctgggaacagaggagca
agtggcattgatggtttactcagcacagcaatcgggtttgctgttggatcaaacaagcat
gtattctgtgtggttggcgacatatcttttcttcatgacacaaatggattggcacttctc
aaccaaagggcacggaggaaacctatgacgataattgttgtgaacaatcatggcggtgcg
atcttcagccttctaccaattgcgaaaaatacttcaccacaaattttgaagaaattcttc
tacacatcgcatgacatatcaatttccaacctctgtgctgcacacagggtaaagcatctt
cttgttcaaaccaaagcagagcttcatgatgccttggtgaaatctaaagcggaacagatt
gattgtgtggtagaagtagacaatagcattgatagcaatgccgactttcatagaattatg
aacaagttctctgcctattctacaactcggtatctggattatcttctgggagatccatgt
cctaagagtgagttagatgccatgcctgtttatataattcatggagcagaatacatgctg
tacaggatccagctttctgcaccacgtacttctgcgctatctgatggcagattctctcat
gaagggtttattctgaagctttgtatggatgataacatcgcaggattcggtgaggttgca
ccaattgaaattcatgaggaggatctgttggatgtcgaagagcaacttagatttcttttc
cacatgatgaaagattctgtgctagatgttattcctttgctgagagggtccttttcaaat
tggatatggacaagcctcgggattcctccttcttcgatattcccaagtgttaaaagtgga
ttggagatggccattcttaatttacttgcgtcacaacggaaatgtggattgtctaaattt
ctcgctggttccgaccccttagtacgagatcagaacagttatgccggcatagagatctgt
gcactggtagactgcaacggtactccaatggaagtagcacatgctgtcgccaaactagtt
gctgaaggttttaccacagttaaactgaaggttgggcgtcgtgaaagccccattgaggat
gcagctgttcttcataaaataagagaagttgtaggatacaagatcaatatccgtgttgat
gcaaataaaaaatggacatatgaacaggcagttgaatttggatatagggctaaaagcctt
cgattggaatacattgaggaaccagtgagctctgtaaatgatctcatcaagttctgtgac
aagagtggcttgcctgtcgcactagatgagactattgacaaccttaagggggatgtaatt
cctaagcttcatcaatttgtgcatccaggaatagttgctcttgttattaaacccagtgtt
gttggaggttttgagaaggcagctcacatagcaaaatgggctcagatgcacgataagatg
gctgtcatcagtagtgcgtatgagagttctgtaggtttggcatcctatatacagttagca
cattatgttgaccaacaaaactccatagtctccagaataaagaacaaagatacatgtggg
gttgtcgcacatggacttggaacatatcaatggttaagggaagatgtatcagagaaggag
ttaaatatccatgcaaccccacttggtgatgggatccgagcttcagtagaagatgcatgt
ggttatcttcaccacctaagcataaacaacaataagatagaaaggacatacaatgaagaa
aaaatgaggtcatattctatccaagttgatgtggacgattgttcttatctagtcaaactt
caagaggctggtgatcatataaatgaaaaggttgttcttttgcttcatggatttcttggt
tcgagtgacgattgggttcccatgatgaaagctctctcccccagtgcacgggttattgct
gttgatcttcctggtcatggcgagtcacaaattttgcagcagcatgttgaaaattcagaa
caatttcctgttacagtgcaatcacttgtagatttgttgctgaagttgatatgccaaata
actgatggtgaggtggtggttgttggctattcaatgggtgctaggattgcactccacatg
gcactaaatcaagttcacttggtaactttctcaatatttatcttttgttcgcacttcttt
cttatgctgattctgagctggttatggcagaatccaagacagattcgaggagctgtgatc
atatcaggaagtcctggattgaaagatgaagagagtaggagacgtcgtattgctattgat
aaatcaagagctaagttcctggtgtcttgtgggctcgaatgttttcttgagacatggtac
tctgcaaaaatgtggaccagcctacgagagcatccaaagttcaattctgtagtgaggaca
cgcagtaaacacaaggacattaaagctctagctaaggttcttgcagactcacgcgtaggg
agacaaaggcccctgtgggaagacttgaaacacttgaagaggcctctactcatcgttgca
ggtgaaaaggacacaaaatttaaagacatctcacagagaatgtgcagcgagataacacag
cacggtgaatgcggatgtgatgagcgtgatggagacgagctctgtgacatgatcgttatc
ccagatgccgggcacgctgtgcatgttgagaaccctcttcctttggtaagggccgtgcgg
aagttcttacaaaagctgcactga
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