Panicum virgatum (switchgrass): 120657205
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Entry
120657205 CDS
T07260
Name
(RefSeq) nuclear-pore anchor-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120657205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120657205
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120657205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
120657205
NCBI-ProteinID:
XP_039791409
LinkDB
All DBs
Position
1N:complement(60721473..60752444)
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AA seq
2048 aa
AA seq
DB search
MPLFISDEELRLLGGDTAAVAERADAAIRELRRQVDTVRAEADAAAIAAEQTCALLEQRY
ASLSAEFDRSQAEAAELTAAAERRAAELASSQAEIHQLRIQAIAKDGEVERLKVEISELH
KSKCQSLELIEQRDAEIKEKDGIIQSYYDKIVNLADSSASKEARIQEVEAKFTHCQAMCN
RITQEKELLEKHNLWLDEELKVKVKNLAELRKTNMDEEARMSARIAELEREISESSSSLR
RGKERISELEQRVSFMEKELCSTKDAAAANEQRLGAELSTVMKLAELHKESSEEWSKKAG
ELEGVIKALETHLTQVEDEYKEKLEKEILSRRDLEKEAADLKHKLEKCEFDLENTRKSSE
LSLIPLTSVAADSTDLVDSRHELPMSDDLNQNDLMVIPKVPSGVSGTALAASLLRDGWSL
AKIYEKYQEATDALLHERRGRRHAEAVLERVLHEIEEKAELILDERAEHERMVEVYALMD
QKLQQALLEHDNFEHTIRNLKSELKRRERDHSVTQKEIDDLQKQVAVLLKECQDIQLRCG
SSLPNVGNGAFSASLGSVLSNVEHNIKDSQMAFKDINGLVQQNVQLRNQVHMLSADLDKK
DMELRESFQIELKKITDDAASRVEKVMKKSEEQAIMIESLHRSVAMYRKLCEEQQKTRSN
AESVPNNLQDSGRTDLMVLFEGSQEVSKKAYEQVSERARSLDEELTKLRAELVSLRSERD
KAVLEADFARDRLNGFTAELEHQRKETNSISLRNAELMHLIVDYERRLREDSDSKQALGE
NSRNLLMKVSVLKGEKEILVKSEKRALDEVRDLTERVHRLQATIDTIHTTAEVRENARSM
ERRNHEEHIKRLERDWAELKKELQEQRDHVRILTLDKKNAFDSCMKQVEDMRKELQSSCK
AASDAESRAAILEAKCSDLEAKLKSKKVIFRDAGHEISATSDDNDELFQLKEELEKYKEE
AQANKNYMVQYKEIAHSNEVALKQLESAHQDYKAEAEVGRKALEDEIAKLRDKLSDMEKS
YAMKCEETAIVIESKEKQITSLMNEISVLRTEISERLPQVEHLEMELASSKSALDEQYKR
WRTAQDNYERQVILQSETIQELTNTSKQLSSLQHEIAILRQTADAQKAENDSLRTLGEQE
KIGLLKEKDDALRKYNELNDQNRNLHNQLEALHIRLAEKERSIAGLPSQRTDSHGEDDLH
SVISYLRRSKEIAETEISLLKQEKSRLQIELESALKSAKEAQDLRRSQADTARTLMLKDE
EFKSLQLQVREINLLRESNIQLREENRHNFEECQKFRDEAQKAKMESERLQSLVREKEVD
AEMCKKELEMQKVEIANLNQRISELVENSKGIDLNTYEGMKNELQNIKSTLRENSMELEI
AKKLLSEKEVAVRNLEEKLAVCHSELDSREKKLNDVESSMKSEMDRLKKINFSIKRKLDN
VVKEKEEVIKENQSLLKQMEDLKSSQKTTSETTFEQAIKEKDFRIQTLERTLEKERDDNK
KEKANRKRNEKLQLNILQRVQQEKKQVEESIEKHKQAVKEVIENYPGLSSDVPPVSALEE
QILSYFRMANDMEESSPFRDAAVTQSPAVETALTDAPASASGRLVDTPPRLTKAKMMEDR
AVATSSKQSTEVRRPGGRRPLVRPTLERTEEPQADTDTSAGDVSMVGQDKGGPSLEREAS
GSLPVLQPSSRKRLISSSQTIDSASQGEANDANPPSKRPKEEESSQGTSEVKSDQLPVGE
IAAQVGVLPSTDDQDGQQSTEEMEPMEEAEATKDDDVGDKDDSGANVDASVDTKGQDADV
SIDMSAVPVEDAQAKSDAVAESFDEDQKIEDSKEDAQLTTATDVDDEMEEGELPEEPEPP
SETALGETNREPTSEGELAGNVFRAASPGGLTERSDVDMSEIEGDTTADHAAVEPDQSPV
AQSGAADASPSRTADASPAREPSLNPVQAGASSRPQNTSTATEAREPSPSPAQAGASSEQ
RNTSTVTEAAETRSRTINLTERARQNRQARFQQRAQPPTTARGRGQQSATQRKDAAGRGS
RGRGGRQT
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgttcatctccgacgaggagctccggctcctcggcggcgacacggccgccgtc
gccgagcgggccgacgccgccatccgcgagctccggcgccaggtggataccgtacgcgcc
gaggcggacgcggccgcgatcgccgccgagcagacatgcgccctcctcgagcaacgctac
gcctccctctccgcggagttcgatcggtcccaggccgaggccgccgagctcaccgccgcc
gcggagcgccgtgccgccgagcttgcctcctcccaggcggagatacatcagcttcgcatc
caggcgattgctaaggatggcgaggtggagaggttgaaagttgaaatctcggagctgcac
aagtcgaagtgtcagtcactggagttgattgagcagagagatgccgaaataaaagagaag
gatggcatcatccagagctattatgataaaattgtcaatctggcagatagttctgctagt
aaagaggctaggatacaagaggttgaagccaagtttacccattgtcaggcaatgtgcaac
cgcattacccaggagaaggagctgcttgaaaagcataatctatggcttgatgaagaactg
aaagtaaaagtgaagaacttagctgaactaaggaaaacaaatatggatgaggaggctagg
atgtcagctaggattgcagagcttgaaagagagatttctgaatcttcgagctccttgagg
cgaggcaaagaacgtatctctgaactggagcaaagggtatctttcatggaaaaggaattg
tgctcaacaaaggatgccgcagctgctaatgaacaacgtctgggtgctgaactttcaact
gtcatgaaactggctgaacttcacaaagaaagttctgaggaatggtcgaagaaggctggg
gagcttgaaggtgttattaaagcattagagacgcatctgacccaagttgaagatgagtac
aaggaaaagctcgagaaggagatcttatccaggagagaccttgaaaaggaagctgccgac
ttgaagcataagcttgaaaaatgtgagtttgatttggaaaatacaaggaagtccagtgaa
ttgagcctcattccactgactagtgttgcagcagactccactgatttagtagactcaaga
catgaactgcctatgtctgatgatttaaatcagaatgacctaatggttattccaaaagta
cctagtggtgtttctggaactgcattagctgcttctcttcttcgtgatggttggagtctt
gctaagatctatgagaaataccaagaagctactgacgctttacttcatgagaggcggggg
aggagacacgcagaagcagttcttgaaagggtcttgcatgaaatagaagagaaggctgaa
cttatcctagatgaacgagctgagcatgagagaatggttgaagtttatgctcttatggac
cagaaattgcagcaagcattgctggagcacgataattttgaacatactattaggaatcta
aagtctgagctgaaaaggcgggaacgtgatcatagtgtgacacagaaggaaatagatgac
ctgcagaaacaagtcgctgttcttctaaaagaatgtcaagacatacagcttcgttgtggt
tccagccttcctaatgtaggtaatggtgccttttctgcaagcttaggcagtgttctttcc
aacgtagagcacaatatcaaggacagtcagatggcttttaaagatatcaatggattagtt
cagcagaatgttcaactccgaaaccaagttcacatgctctcagctgatcttgacaaaaag
gacatggaactacgggagagcttccaaattgagttgaagaaaattaccgatgatgctgca
tccagggttgaaaaagtgatgaagaaatctgaagaacaagcaataatgattgaatctctt
caccgatccgtagcgatgtatcgtaaactttgtgaagagcagcagaagactcgttcgaat
gctgaatcagtacccaataatttgcaagatagtggcagaacggacctgatggttctgttt
gaaggatcacaggaagtctcaaagaaagcttatgagcaagtctctgagcgagccaggagc
ctcgatgaagagctgacaaagttgagggctgagcttgtgtctctgcggtctgagcgtgat
aaggcagtgcttgaagctgattttgctcgggaccggcttaatgggtttacagcagagctt
gagcaccagaggaaggagactaattccatttcactcagaaatgcggagttgatgcatttg
atagttgattacgaacgtaggcttcgtgaagattcagattctaagcaagccttaggggag
aactcaaggaatctattgatgaaggtgtccgttttgaagggtgaaaaagagattctagtg
aaatcagagaaaagagctttggatgaagtccgtgatttaacagagcgagtgcatcgtctg
caggctacgattgacaccatacataccactgcggaggttcgagagaatgcaaggtctatg
gaaaggagaaatcatgaagagcacattaagcgactagaaagggattgggctgagcttaag
aaggagcttcaggagcagcgagaccatgttcgtattctgacccttgataagaaaaatgcg
ttcgacagctgtatgaagcaagtggaggatatgagaaaggaactgcagagctcgtgcaaa
gctgcttctgatgctgaatcaagggctgccattttggaggccaagtgttctgatttagag
gcaaagctgaaatcaaaaaaggtcatttttagggacgctggtcatgaaatctcagccaca
tctgatgataatgatgaactattccagttgaaagaggagttagaaaaatacaaggaggaa
gcacaagcaaataagaactacatggttcagtataaagaaattgcgcactcaaatgaagtt
gcacttaagcaattggaatctgcccatcaggactacaaggcagaggccgaggttggcagg
aaagccttggaagatgagattgctaaattgagggataagttatctgacatggagaagagc
tatgcgatgaagtgtgaagaaacagccattgtgattgaatctaaagagaagcaaatcact
tctctcatgaatgagatttctgttctaagaacagaaatttctgagagattaccgcaggta
gaacatttagaaatggaattggcttcctcaaaaagtgcactagatgaacaatacaagcgt
tggcgaactgcccaagacaattatgaacggcaggttattctgcaatctgaaacaatacag
gagttgacaaatacttccaagcagctatcctcattgcagcatgaaatagctatacttcgt
cagacagcagatgcgcaaaaagctgaaaatgattccctaagaacacttggtgagcaagaa
aagataggattattgaaagaaaaggatgacgccctgcggaagtataatgagctgaatgat
cagaatagaaatctccacaatcagttagaagctctgcacattcggttagctgagaaagaa
cggagtattgctgggcttccgtcacaacgtactgactcacatggcgaagatgatcttcat
agtgtaatcagttatctgcgcagatcaaaagaaatagcagaaacagagatatcattgctt
aaacaggagaagtcacggcttcagatagaactggaaagtgcattaaagtctgcgaaggag
gcacaggacttgcggcgcagtcaggctgatactgccaggacattaatgctcaaggatgaa
gaattcaagtcactgcagctccaggtcagagaaattaacttgcttcgtgaaagcaacata
cagcttagagaggagaataggcacaattttgaagaatgccagaaattccgcgatgaagct
caaaaggccaaaatggaatctgagaggttgcagagtcttgtacgggaaaaggaggtagac
gctgaaatgtgcaaaaaggaattagaaatgcagaaggtggaaatagcaaatctcaaccaa
aggatttctgagttggttgaaaatagtaaaggcattgatttgaacacttatgagggcatg
aagaatgaacttcaaaatatcaaatcaaccttgagagagaattctatggagcttgaaatt
gcaaaaaaacttctttctgagaaagaagttgccgtaagaaatttggaggagaagcttgct
gtctgccattctgaattggattccagagaaaagaagctaaatgatgtagagtcgtccatg
aaatctgagatggacaggctgaagaagattaatttctccattaagagaaagcttgacaac
gtggtgaaagagaaggaggaggtcattaaagaaaaccaaagccttctgaagcagatggag
gatcttaaatcaagtcagaagacgacgtcagaaactacatttgagcaggctataaaagaa
aaggatttcaggatacagacattggaaagaaccctggagaaggagagagatgataacaag
aaagaaaaagcaaaccgtaaaaggaatgagaaattacaactgaatattcttcaaagggtt
caacaggagaagaaacaagtggaagagtctatagagaagcataagcaggctgtgaaagaa
gtgattgagaactatcctggactatcatctgatgtcccaccagtctctgcactggaggag
caaattctttcatacttccgcatggctaatgatatggaggaatctagtccattccgtgat
gctgcagtgactcagagtccagctgttgaaactgcccttactgatgcacctgcttcagct
tcaggtcgactggtagatactccgccaaggctgactaaagctaaaatgatggaagataga
gcagttgctacttcatccaaacaaagcactgaagtacgtagacctggaggaagaagacct
cttgttcgtcctactcttgaacgaactgaagaaccacaggctgatacggatacatcagct
ggtgacgtctcgatggttggtcaggacaaaggtggcccatcactagagcgtgaagcttct
ggcagtctacctgtgctacaaccttcaagtcgtaaacgtctcatatcttcttcacagaca
atagacagtgcctcacaaggtgaggctaatgatgccaatcctccatctaagaggcccaag
gaggaagaatcttcacaagggactagtgaggtcaagagtgatcagctacctgttggggag
atagcagcacaggttggtgtgcttccgtccactgatgaccaagatggacaacagtctaca
gaagagatggagcccatggaagaggctgaggcaacaaaggatgatgacgtgggtgataaa
gatgactctggagcaaatgtggatgcatcagtggacaccaaaggccaggatgctgatgtt
agtattgacatgagtgcggttcctgtagaagatgcgcaagcaaagtcagatgcagtagca
gaatcatttgatgaggaccaaaaaattgaagattcgaaggaagatgctcagcttactact
gcaacagatgttgatgatgagatggaggagggagagttgccggaggaacctgaaccacct
tcagaaactgcactcggagaaactaatagggagcctacttcagaaggtgagctagctggt
aatgttttcagggcggcatctccaggagggctgacagagaggagtgatgttgatatgtca
gagattgagggtgataccacagctgatcatgctgcagtggaaccagaccaaagtccggta
gcacagtcaggagctgctgatgcctcacctagcagaactgctgatgcatcccctgcacgt
gaaccttcccttaatccagtccaagctggtgcatcttctagaccgcagaataccagcact
gcaacagaggcacgtgaaccttcccctagtccagcccaagctggtgcatcttctgaacag
cggaataccagtactgtaacggaggctgctgaaactcgttctagaacaatcaatttaact
gagagggccagacaaaataggcaagccagatttcaacaacgcgcgcaaccacctaccact
gccaggggtcgtggccagcaatctgctacccagaggaaagatgctgctggccgaggatcc
agggggcgtgggggtcgtcagacctag
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