Panicum virgatum (switchgrass): 120658504
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Entry
120658504 CDS
T07260
Name
(RefSeq) putative multidrug resistance protein
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120658504
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120658504
04147 Exosome [BR:
pvir04147
]
120658504
04090 CD molecules [BR:
pvir04090
]
120658504
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120658504
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120658504
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120658504
CD molecules [BR:
pvir04090
]
Proteins
120658504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_22
Zeta_toxin
AAA_21
ABC_ATPase
RsgA_GTPase
AAA_15
DUF87
DUF815
AAA_25
APS_kinase
AAA_33
AAA_30
AAA_23
SRP54
AAA_28
Motif
Other DBs
NCBI-GeneID:
120658504
NCBI-ProteinID:
XP_039792686
LinkDB
All DBs
Position
2N:complement(64248179..64256398)
Genome browser
AA seq
1265 aa
AA seq
DB search
MPDSSPESGGMAKDDGPAETVEQRAAASVLRSFASVFVHADAADVALMVLGLMGAMGDGM
STPVMLAITSRVFDDAGSGTDHLQQFSSKMNENVRNTLFLAAAHLIAAFLEAYCWTRTAE
RQSSRMRARYLRAVLRQDVEYFDLNVGSTSEVVTAVSGDTLVVQDALSEKVPNFVMNVTM
FVASYAVAFALLWRLTLVSLPSVLLLIVPGFLYGRVQAGLARRMREQYARPGAIAEQAMS
SVRTVYSFVAERTTAARFSAALEESVRLGLRQGLAKGLAVGSGGIRIAIFAFNVWYGSRL
VMYHGYKGGTVYIVSVIIVVGGGALGSALSNIKYLTEASSAAERIMELIRRVPKIDSESG
AGEVLENVAGEVEFRNVAFCYPSRPKSPVFENFSLHVPAGRSVALVGASGSGKSTVIALL
ERFYDPSAGVVTLDGVDIRRLQLKWLRAQMGLVSQEPALFATSIRENIKFGKEDATEEEV
TAAAKAANAHSFISQLPRGYDTQVGERGIQMSGGQKQRIAIARAILKSPKILLLDEATSA
LDSNSERVVQEALELVSMGRTTIVVAHRLSTIRNADMIVVMQSGEVKELGSHYELNAQEN
GIYSSLVRLQQTTDVGMTEEAGKTGSTDILRQSDSQSITRSFSVPSRLSSSHLIGDAKDD
GNLRDLKLPVPSFRRLLMLNAPELKQASAGIFCAVVSGGIQPVFAYAMGSVTSIFFSTNH
QEIEKETRTYTLISTGLAVLTFLISIGQYYNFAAMGEYLTKRIRERMLAKFLTFEIGWFD
RDENSSGSICSQLTHDANIVRSLVGDRMSLVTQTVSAVLTAYIMGLAIAWRLALVMIAVQ
PLDITCFYTRHVLLKRMSKKSTQAQSECSKLAAEAVSNLRTITAFSSQNRILHLLDQAQD
APRKENIRQSWLAGLGLGTSMSLLRCTWALTFWYSGILIAGHHITAKAFFQTFLILVSTS
LVIADAGSVTADLAKGANAVASVFAVLDRETEIDPDSPEGYKPEKLRGEVDIRGVDFAYP
SRPDVIIFKRFSLSIQPGKSTALVGQSGSGKSTIIGFIERFYDPITGVVEIDGKNIKTYN
LRALRQHIGLVSQEPTLFAGTIRENIMYGRETASEEEIENAARSANAHDFISNLKDGYNT
KCGDQGVLLSGGQKQRIAIARAILKNPAILLLDEATSALDSQSEKVVQEALGRMLVGTTS
VVVAHRLSTIQNCNMIVVLEKGIVVETGSHASLIAKGPAGTYFGLVNMQQGSNHTSSSVI
VNENP
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatagctcgccggagtccggaggtatggctaaagacgacggcccggcggagacg
gtggagcagagggcggcggcttcggttctgcggtcgttcgcgtcagtgttcgtgcacgca
gatgcggcggacgtggcgctgatggtgctgggcctgatgggcgccatgggcgacggcatg
tcgacgccggtgatgctggccatcactagccgcgtcttcgacgacgccggcagcggcacc
gatcacctccagcagttcagctccaagatgaacgagaacgtgaggaacaccctgttcctg
gctgccgcacacttgatcgcggcgttcctagaggcctattgctggacgcggacggcggag
cggcagtcgtcgcggatgcgagcacggtacctgagggctgtgctccggcaggacgttgag
tacttcgacctcaacgtgggctcgacgtcggaggtggtcaccgccgtctccggcgacacg
ctcgtcgtgcaggacgcgctgagcgagaaggttcccaacttcgtgatgaacgtcaccatg
ttcgtggccagctacgccgtcgcgttcgcgctgctgtggcggctcacgctggtgtcgctg
ccgtccgtgctgctgctcatcgtccccggcttcctgtacggccgcgtccaggccggcctg
gcgcgccggatgcgggagcagtacgcgcgcccgggcgccatcgccgagcaggccatgtct
tcggtccgcaccgtatactcgttcgtcgcggagaggaccaccgcggcgcggttctccgcc
gcgctggaggagtcggtgcggctcggactcaggcaggggctcgccaagggcctcgccgtc
ggcagcggcggcatccgcatcgccatcttcgccttcaatgtttggtacggcagccgcctc
gtcatgtaccacggctacaagggcggcaccgtctacatcgtctccgtcatcatcgtcgtc
ggaggcggagcgttggggtcggcgttgtcaaacatcaagtacctgactgaggcgagctcg
gcggcggagaggatcatggagttgatcaggcgggtgccgaagatagactctgagagtggc
gccggcgaggtgctggagaacgtcgccggcgaggtggagttcaggaacgtggcgttctgc
tacccgtcgcgaccgaagagccccgtgttcgagaacttcagcctgcacgtgccggccggg
cgctcggtggcgctggtgggtgccagtggctcagggaagtcgacggtgatcgcgctgctg
gagcgcttctacgacccgtcggccggggtggtgaccctcgacggcgtggacatccggcgg
cttcagctcaagtggttgcgcgcgcagatggggctcgtcagccaggagccggcgctgttc
gcgacgtcgatcagggagaacataaagtttggcaaagaggacgccacggaggaggaggtc
acggccgcggcgaaggccgccaacgcccacagcttcatctcgcagttgccgcggggctac
gacacgcaggtgggtgagcgtgggatccaaatgtctggaggacagaagcaaaggattgct
attgctagagcaatcctaaagtcacccaagatcctcctccttgatgaagccactagtgct
ttggacagtaattcagagcgtgttgtgcaggaggcgcttgaattggtctccatgggccga
actactattgtcgttgcacatcgtctctccacaatccgcaatgctgatatgattgttgtc
atgcagtctggtgaggtgaaggaattagggtcccattatgagctcaatgcacaagagaat
ggcatatactcatctcttgtacgcctccagcaaaccacggatgtgggcatgactgaggag
gctgggaaaactggaagtactgatattttgcggcaatcagacagtcaaagcataaccagg
agtttctctgtaccaagtaggttaagctcatcacatttgataggtgatgcaaaagatgat
ggtaacttaagggatctaaagcttccagtgccatcgttcaggaggctacttatgcttaat
gcgccagagctgaagcaggcatcagcaggaatcttctgtgcagttgtgtctggaggtata
cagcctgtgtttgcctatgccatgggcagcgtgacctcgatcttcttctcaacaaatcat
caagagatcgagaaggaaacacgcacctacacacttatctctaccggccttgcagtgttg
acattccttattagtattgggcaatattacaactttgctgccatgggagaatacctcacc
aagaggataagggaacggatgctcgctaaatttctcactttcgagattgggtggtttgat
cgtgatgagaattctagtggttccatatgctcacaacttacccacgacgccaacattgtg
aggtcacttgtgggtgatcggatgtccctagtgacccaaacagtttctgctgttctaacc
gcctacatcatgggtttggcgattgcttggcgtttagctcttgtgatgattgcagtgcag
cctcttgacattacatgcttttatactcgccatgtcttactaaagaggatgtccaagaaa
tcaacacaggcacaatctgaatgtagtaagctagctgctgaggccgtctctaatctccga
accataacggctttctcatcccagaaccgcatcctgcacctccttgaccaagcacaggat
gctccacgcaaagaaaacatccggcaatcatggttagcaggtttgggcctcggcacctcc
atgagccttttgagatgcacatgggcactcaccttttggtatagtggaattctcatagct
ggtcaccatattactgccaaggcatttttccaaacctttctgattctagtaagcacaagt
cttgtgatcgcagacgcgggtagtgttactgcagatcttgctaagggtgctaatgcagtc
gcttcggtgtttgctgttcttgatcgagaaacagaaatagatcccgacagccctgaagga
tataagccagagaagctcagaggcgaggtggacattagaggggttgattttgcatatcca
tcaagacctgatgtgatcatcttcaaaagattctcgttgagcatccaaccaggcaagtca
acagcacttgttgggcaaagtgggtcaggcaagtcaaccatcattgggtttatagagagg
ttctatgacccaatcaccggggtagtagagatcgatggcaaaaatattaaaacatacaat
cttcgagccctacgacagcatattgggctggtgagccaagagccaacactatttgcaggt
accattagggagaacattatgtatggcagagaaacagcaagtgaggaagaaattgagaat
gcagcaaggtctgcaaatgcacatgacttcattagcaacctgaaagacggatataacaca
aagtgcggtgatcaaggtgttctattatcaggagggcagaaacagcgcatcgctatagcc
cgtgcaattctgaagaatcctgccatattgcttctagatgaagctacaagtgcattagac
agccagtctgagaaggtggtgcaagaggcattggggcgaatgttggtcggcacgacaagt
gttgtggtggcgcataggttgagcactattcagaattgtaacatgatcgttgtgcttgag
aaaggaattgttgtggagacaggatcacatgcatcgctcattgcgaagggtcctgctgga
acatactttggattggtcaatatgcagcaaggaagcaaccacaccagcagctctgtgatt
gtgaatgaaaacccatag
DBGET
integrated database retrieval system
