KEGG   Panicum virgatum (switchgrass): 120663536
Entry
120663536         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120663536
  09124 Replication and repair
   03420 Nucleotide excision repair
    120663536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120663536
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120663536
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     120663536
  RNA polymerase III system
   RNA polymerase III
     120663536
  RNA polymerase I system
   RNA polymerase I
     120663536
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120663536
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DnaT
Other DBs
NCBI-GeneID: 120663536
NCBI-ProteinID: XP_039798320
LinkDB
Position
3N:complement(1334325..1337102)
AA seq 247 aa
MDSADSTAATAALARNGAADPAAAIDDDDGVPEVAACISSMIDRGGSVESHRLFLARRTA
LEMLRDRGYSVPEDELARTLPEFRAWWADKPELERLAFTTTLASDPSNKVKVVFCPPQPV
KIALIREIYSGVKEENLSRLILILQSRIMSRAKESIKDIFPFKVDTFQITELLVNITKHV
LKPKHEVLTPEEKAKLLKEYNVVDSQLPRMLETDAIARYHGLGKGTVVKVTYDSELTGNH
VTYRCIF
NT seq 744 nt   +upstreamnt  +downstreamnt
atggactccgcggacagcacggccgccaccgccgcgctcgcgcgcaacggcgccgccgac
cctgccgcggccatcgacgacgacgacggcgtccccgaggtagccgcctgcatatcgtcg
atgatcgaccgcggcggcagcgtcgagagccaccgcctcttcctggcgcgccgcaccgcg
ctggagatgctccgcgaccgcgggtacagcgtcccggaggacgagctcgcccgcaccctc
ccggagttccgtgcctggtgggccgacaagcccgagctggaacgcctcgccttcaccact
acactcgcctccgacccgtccaacaaggtgaaagttgtgttctgtccacctcaacctgtc
aaaattgcacttatccgggagatatatagcggagtcaaagaagagaacttgtctagactt
attctgatattgcagagcagaataatgtctagagccaaagaatctattaaagatatcttc
ccatttaaagttgacacattccagatcacggaactactggtgaacattactaagcatgtc
ctgaagcccaagcatgaagtattaactccagaggagaaagccaagctcctgaaggaatac
aatgtggtggattcacagttgcctcgcatgctggagactgatgctattgctcgctaccac
ggccttggcaagggaactgttgttaaagttacatatgacagcgagcttaccgggaaccat
gtgacatacaggtgtattttctga

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