Panicum virgatum (switchgrass): 120663921
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Entry
120663921 CDS
T07260
Name
(RefSeq) DNA (cytosine-5)-methyltransferase CMT2-like isoform X1
KO
K00558
DNA (cytosine-5)-methyltransferase 1 [EC:
2.1.1.37
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00270
Cysteine and methionine metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
120663921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120663921
03032 DNA replication proteins [BR:
pvir03032
]
120663921
03036 Chromosome and associated proteins [BR:
pvir03036
]
120663921
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
pvir02048
]
120663921
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.37 DNA (cytosine-5-)-methyltransferase
120663921
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120663921
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
DNA methylation enzymes
120663921
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120663921
Prokaryotic defense system [BR:
pvir02048
]
Restriction and modification system (R-M system)
Type II R-M system
DNA methyltransferases
120663921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_methylase
BAH
Chromo
PemK_toxin
Motif
Other DBs
NCBI-GeneID:
120663921
NCBI-ProteinID:
XP_039798801
LinkDB
All DBs
Position
3N:5813744..5823500
Genome browser
AA seq
1294 aa
AA seq
DB search
MEPPPPDPASPPATGHPAAAEGSSPSPGGGDGGAAEGGFSAGLEPLWSLLFGDPAELEPM
WSPPRDFGVGEGFAVPEPDADDGDAEGPWDGAPWRSTGIVAGEGAAASFPEFEPAAEAST
GGAALEVRPLGYSAPDSASPVPPCSPAPVPLEVHAPELIPGWEEPAPPPAAASSEAKLEE
CTLNSVPSPPAPPAPDDNPDLGAEDGPNDGSSSQRITSGAMVIFGLTAAERPEVNAASCS
MPDVGGRDGTSLRRSPRIVAAKAKANAASLEWKAGPSKTSKLRLADSGRSTISEGSSLEE
TTTVAPIKPVDLLDGVKQQGSREVVAVQSSSINVVVALPVVSKRSSKNKAVSVSSPRKAR
SASKVLANSNRVSAVLLAMNCGPVNKAGSHIPSRKRKLASEKCLPSLERVDAVLHNSGLV
SANKVEMPLELQAAASQPPKAKRARVSSGKCSSNLRRAENNNTSICKLPMVTVTLDPEDK
PKLILDKYITDSEMVDSEDGSCFFMGEAVPDEEARQRWPNRYQSNHCLLKKDKWSNTQMF
SNAGKAVLDVKCHYLQASVCGSTLCIGDCAFIKGPEGKPHYIGRLLEFFETSAGEYYFSV
QWFFRAEDTVMEDQAQSHDPRRLFYSDLKDDNLLDCIVSKVTIVQVSPSVNEKSQSIPSF
HYYYDMKYSLDYSTFSTMEMGGSYDTLQSHYTSSSNNNVKRINSTERQKSPTPEMELSLL
DLYCGCGGMSTGLCFGARGGGVNLIARWAVDGDEAACESFRLNHPETRVRNETTDDFLEL
LKEWKKLCKAYVKLHSKLKSHSSDLAQSSSETLECSTIPPEEFEVWKLVDICFGDPNGVG
KRGLYFKVCWKGYGPNDDTWEPIEGLKNCKEAIRDFVIQGHKDKILPLPGDADVVCGGPP
CQGISGYNRNREFDAPFNCERNKQIIVFMDVIQFLKPKYIYMENVLDILKFADATLARYA
LSRLVAMHYQAKLGIMAAGCYGLPQFRMRVFLLGCHPKEKLPPFPLPTHEAIVKNGCPLA
FERNLVGWPDGMPMQLEKPIVLEDALSDLPEVANGEKREEMLYVKGPQTEFQRYIRSFNS
EVLGSRDNVTKVSRSKLYDHRPKALDDDNYLRVLQIPKKKGANFRDLPGVIVGPDNVARL
DPTKERILLPSGNPLVIDCVLTYEHGKSLSGSFRYRPYGRLWWDEVVGTVLTSPNARVQA
LIHPAQDRLLTIRESARLQGFPDSFRFLGTVKDRYRQIGNAVAVPVGRALGYALAMAILK
KTGDDPLMVLPPKFAFSHEVRGLSSLNDLQSGNI
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggagcccccgccccccgaccccgcttcgccgccggcgaccggccaccccgccgcagct
gagggctcctccccctccccgggaggcggcgacggcggggcggcggagggcgggttcagc
gcggggctggagccgctctggtcgctcctcttcggcgaccccgcggagctggagcccatg
tggtcgccgcccagggacttcggcgtcggggaggggttcgcggtcccggagccggacgcc
gacgatggcgacgccgaggggccctgggacggcgcgccctggcgctccaccgggatcgtc
gccggcgagggcgcggccgccagcttcccggagttcgagcccgccgcggaagcttccacg
ggaggagccgcgctcgaggtgaggccgctcggttattccgcccccgattctgcttcgccg
gtgccaccgtgctccccagctccggtgcctttagaggtgcatgcgcccgagctgatcccc
ggctgggaagagcctgcgccaccgcctgcagcggcttcttcggaagccaaactagaggag
tgcaccctaaactcggtgccatcgccgccggccccgccggcgccagatgataatcctgat
ttgggggcagaggacggtcccaatgacgggtcctcctcgcagagaatcacctcgggagcc
atggtgatctttggtctgactgcggcggaacgtcctgaggtcaatgcagctagctgcagt
atgccagatgttggtggtagagatggcacgtctctccggaggtccccaaggattgtggca
gccaaggccaaagcaaatgccgcttctttggaatggaaagcagggccgtctaaaacttcc
aagctccgcttagcggattctgggcggagcaccatcagtgaagggagctcacttgaggag
acgaccacggttgctccaataaagccagttgacttgctcgatggggtgaagcagcaagga
tcacgagaggttgttgcagtgcagagctcctctatcaatgttgtggtagctttaccggtg
gtgagcaaaaggtcctcgaagaacaaagcagtgtctgtgtcctctccaaggaaggctaga
tcagcctcaaaggtattagcgaattccaacagggtctcagctgttttgctagcaatgaat
tgtgggcctgtgaacaaagcaggttctcatataccttctaggaagcgcaagcttgcttct
gagaagtgcttgcccagtttggagagagtggatgctgtgttacataactctgggttagtg
agtgctaataaagttgagatgcccctagagctccaggcagcagcatctcagcctccaaag
gcaaaaagggccagggtatcctcagggaaatgctcatcaaacttgaggagggcagagaac
aataatacctcaatctgcaaactgccaatggtcacagtgaccttagatccagaggataag
cctaaacttatattggataagtatattactgattctgaaatggttgatagcgaagacggt
tcctgtttctttatgggtgaggcagtgcctgacgaggaggctaggcagaggtggcctaac
cgctatcagagcaatcattgccttctgaagaaggataagtggagcaatacccaaatgttt
tccaatgctggcaaagctgtcttggatgtcaaatgtcactatttgcaagctagtgtatgt
ggatctactttatgtattggggattgtgcattcattaagggtccagaaggaaaaccacat
tatattggcaggttgttagaattcttcgaaacaagtgcaggtgaatattacttcagtgtg
cagtggtttttcagagctgaagacacggtcatggaagaccaagcacagtctcatgaccca
aggaggctcttttactcagacctgaaggacgacaatttactagactgcattgtttctaaa
gtgaccattgtgcaagtttctcctagtgtaaatgaaaagtctcaatcaattccttcgttt
cactattactatgacatgaagtattctctggactatagtacattctctaccatggaaatg
ggaggttcatatgacacattacagtcacattacactagtagcagcaacaacaatgtgaaa
aggatcaattccactgaaaggcagaagtctcccacaccagagatggagctctctctgtta
gatctgtactgtggttgtggggggatgtcaactggactttgttttggggctcgtggtggt
ggtgtgaatcttatagcgagatgggctgttgatggagatgaagctgcatgtgaaagcttc
agactgaatcatccagaaactcgggtccggaatgaaaccaccgacgatttccttgagttg
ttgaaggaatggaaaaaactatgcaaagcctatgtgaagcttcacagtaaattaaagtcc
cattccagcgatttagcacaatccagtagtgaaactctagagtgttctacaattcctcct
gaagaattcgaagtatggaagctagttgatatttgcttcggggatccaaatggtgtcgga
aagcgtggcttatactttaaggtctgttggaaaggttatggccctaatgatgacacatgg
gagccaattgaaggcttaaagaactgcaaagaggcaattagggattttgttattcaaggg
cataaggacaaaatattacctcttcctggtgatgcggatgtcgtatgtgggggaccacca
tgccaaggcatcagtggctacaaccgcaatagagaatttgatgcaccattcaactgtgag
agaaacaagcagattattgtcttcatggatgtaatccaatttttgaagcccaaatacatt
tatatggaaaatgtccttgatatattgaagtttgctgatgcaacacttgcaagatatgct
ttaagccggctagttgctatgcattaccaagcaaaactcgggatcatggctgctgggtgt
tatggcctcccacaattccgaatgcgtgtatttttgttgggctgtcatcctaaggagaaa
ttgcccccatttcctcttcctactcatgaagcaatcgtgaagaatggttgcccattggct
ttcgagcgcaatttggttgggtggcccgatggcatgccaatgcaactagaaaaaccaatt
gttcttgaagatgctttatctgatcttccggaagtggcgaatggagaaaaacgtgaagaa
atgctatatgtaaagggacctcagacggaattccaaagatacattcggtcatttaattct
gaagtgcttggatccagagataatgtcacaaaagtttccaggtcaaaattgtatgaccat
cgaccaaaagcactagatgatgataactacctaagagtattgcagattcccaagaaaaag
ggagctaattttagagaccttccgggagtcatagtaggtccagacaacgtagctagatta
gatccaactaaggagagaatacttttgccttctggtaatcctctggtgattgattgtgtg
ctaacctatgagcatggtaaatcattaagtggttcctttcggtacagaccatatggtcga
ctatggtgggatgaggtagttggaaccgtgctgacatctccaaatgctcgcgtgcaggcc
ttaatacatcctgcacaagacagactgctaaccatccgtgaaagcgctcgtttgcaaggt
tttcctgacagcttcaggtttcttggaacagtcaaagacaggtatcgccagattggaaat
gcagtagcagtacctgtcggccgtgcacttgggtatgccctggccatggctattctgaag
aagactggagatgatcctctgatggtgttgccacccaagtttgcattctctcatgaagtg
cgaggtctttcgagtctgaacgatcttcagagtggcaacatctaa
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