Panicum virgatum (switchgrass): 120664793
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Entry
120664793 CDS
T07260
Name
(RefSeq) beta-galactosidase 8-like
KO
K12309
beta-galactosidase [EC:
3.2.1.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00052
Galactose metabolism
pvir00511
Other glycan degradation
pvir00531
Glycosaminoglycan degradation
pvir00600
Sphingolipid metabolism
pvir00604
Glycosphingolipid biosynthesis - ganglio series
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
120664793
09103 Lipid metabolism
00600 Sphingolipid metabolism
120664793
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120664793
00604 Glycosphingolipid biosynthesis - ganglio series
120664793
00511 Other glycan degradation
120664793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120664793
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
120664793
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120664793
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_35
BetaGal_ABD_1
BetaGal_gal-bd
Glyco_hydro_42
BetaGal_ABD2
OxoDH_E1alpha_N
Motif
Other DBs
NCBI-GeneID:
120664793
NCBI-ProteinID:
XP_039800066
LinkDB
All DBs
Position
3N:18227662..18234493
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AA seq
670 aa
AA seq
DB search
MASDGAFHNLLLLAVLLCLALTSSVGGEASRRFWIENDTFMKDGAPFQIVGGDVHYFRIV
PEYWKDRLLRAKALGLNTIQTYVPWNLHEPQPQSWKFNGFADLESYLRLAQKLGMLVMLR
VGPYICGEWDLGGFPPWLLTIEPALKLRSSDSTYLSLVGRWWGVLLPKVAPLLYRNGGPV
IMVQIENEFGSFGDDKNYLHYLVQLARRYLGDDIVLYTTDGGAMGNLKNGSISQDDVFAA
VDFETGSNPWPIFRLQKKYNLPGKSAPLTSEFYTGWLTHWGESMATTDATSTAKALKTIL
CRNGSAVLYMAHGGTNFGFYSGANTGQDEYDYKPDLTSYDYDAPIKEHGDVHNLKYKALR
SVIHECIGTPLHPLPSDIEKANYGLVKLQKVASLFDIIDNISDPLKGVVSEHPLYMEQIG
QMFGFLLYISEYQGKLPSSILSIPKVHDRAQVFLSCSTDSVRNPRYAGAIERWSSKTLEI
PNLGCPANTSLYILVENMGRINYGPYIFDRKGILSPIQIDGVTLCHWKMYPLTFNSLDNL
PKIQLVTQMPDVRASKVSIIHGHSEKKFQESSFYLNEPEFYEGHFHIDSESEIKDTFISF
RGWNKGVVFVNNFNIGRFWPARGPQCALYVPGPILRPGDNVIVIFELHGPNPELTVNLVT
DPDFTCGPKQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgatggagccttccacaaccttcttctcctggcggtcctcctctgcctcgcg
ctcacctcgtcggtcggtggcgaggcgtcgagaagattctggatcgagaatgataccttc
atgaaggatggggcgccgttccagatcgtcggcggcgacgtccactacttccgcattgtt
cctgagtactggaaggatcgacttttaagagcaaaggcactaggcttgaacacaattcaa
acatatgtaccttggaatctgcatgagccacaaccacagagttggaaattcaatgggttt
gcagatcttgaatcatatctgagacttgcacaaaaattaggaatgctggtcatgcttcgt
gtaggtccatacatttgtggagaatgggacttaggaggttttccaccttggttgctcacc
atagaacctgctcttaaactgcgatcatctgattcgacatatctctccttggtggggaga
tggtggggagtactacttccaaaagtagcaccattattgtacagaaatggaggtccagtt
attatggttcagattgaaaatgaatttggttcatttggagatgacaagaattaccttcat
taccttgttcaactggctagaagatatcttggagatgacattgttctttatacaactgat
gggggcgccatgggcaatttaaagaacggatcaatttctcaagatgatgtttttgctgct
gttgattttgaaaccggatccaatccatggcccatattcagattacagaagaaatacaac
ttaccaggaaaatcagcccctctaacttcggaattttatactgggtggctaacacactgg
ggtgaaagtatggcaacaacagatgccactagtacagctaaagcccttaaaacaattttg
tgccgcaatggttctgctgtactttatatggctcatggtgggaccaattttggattttat
agtggtgcaaatactggccaagatgaatatgattacaagccagaccttacttcttatgac
tatgatgcaccaattaaggagcatggagatgtgcataatttaaaatacaaagcactgaga
agcgtaatacatgaatgtatcgggactcctctccatccacttccttctgacattgaaaag
gcaaattacgggcttgtgaaattacagaaggttgcgtctttgtttgacatcattgataac
atcagtgatcctttgaaaggtgttgtttcagagcatcccctgtatatggaacaaataggc
cagatgtttgggtttctattgtacatatcagaataccaagggaaactcccatcaagcatc
ctatcaatcccaaaggtacatgacagagctcaagtgttcctgtcttgctcaactgacagt
gtcagaaacccaagatatgctggtgcaattgaaagatggtctagtaaaacactagaaata
ccaaatttaggatgtccagctaatacaagcctgtatatcctggtagaaaatatgggtcgt
ataaattatgggccatatatttttgaccgaaaaggaatactatctcctattcaaatagat
ggtgttactctctgtcactggaaaatgtatccacttacattcaattcactggacaacctt
ccaaaaatccaactagtcactcaaatgcctgatgttagagctagtaaagtgtccattatt
catggtcactcagaaaagaaattccaggaatcgtcgttctatttgaatgaacctgaattt
tatgaaggccatttccatattgactctgagagtgagataaaggatacatttatatcattt
cgtggttggaacaagggtgttgtttttgtgaacaacttcaacattggaagattttggccg
gcacgtggaccacagtgtgccctttatgttcccgggccaatcctcagacctggagacaac
gtcattgtaatctttgaactgcacggtccaaatcctgagctcaccgtcaacttagtaaca
gatccagatttcacatgcggtccaaaacagtaa
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