KEGG   Panicum virgatum (switchgrass): 120666046
Entry
120666046         CDS       T07260                                 
Name
(RefSeq) helicase and polymerase-containing protein TEBICHI-like isoform X1
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120666046
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     120666046
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    120666046
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII HHH_5 Helicase_dom4_arc
Other DBs
NCBI-GeneID: 120666046
NCBI-ProteinID: XP_039801769
LinkDB
Position
3N:46863519..46894358
AA seq 2110 aa
MASGSSHHQIDQFFPATKRRSSSRKDDAPRPGPQHGSPGGAKGSLEGYLVRSPSTRATVA
ASAALAGSPRGGDAGARRSLTAAMDVDVASSPPAPAVDGADLELRRFTTDFLSHCCSAIP
PLRDDSEYREQLEKKQKRSASQSILVPCDNASAKKQCIAHCSGLEALKESDDSVAFKKQC
INHHGGSEAVEQESVEGVKVSCVGFSALQRCSFTPNTTQKKVGFSLAPGDTPKSVSRNSL
TSPGEEFWNAAIEFADGISAQTDKVRGKPKFDAAEDKLSCAVALCSKTLPRAGKDEHDCL
NTVGSNDTHQMEKLSNKVEFLAAKSQHVNSSPLPVKHLDFCHEDDIQVSGLKKCEEKGRN
EADNVQTNHVELKDGGLQRKENIRKGSIDLVNAMKTSALDLHTDSAAMFRCHGVFKSTTE
GNVHSTREGDKDSHQNKSLAAYSNGCLPKKDTKSKFVSQEVEASTPTSSVPLKDHSKLSS
WLPPELCAVYMKKGISELYPWQVECLLVEGVLEKRNLVYCASTSAGKSFVAEVLMLRRIL
SSGNMAILVLPYVSICAEKAQHLEQLLEPLGRHVRSFYGNQGGGSLPKDTAVAVCTIEKA
NSLVNKLLEDGRLSELGVIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGNSESSSGETS
GSSSGKMATHGLQIIGMSATMPNVAAVADWLQAALYQTDFRPVPLEEFIKVGNQIFDKDM
NVVRVLPKVADLGGKDPDHIVEMCNEVVLQGHSVLLFCSSRKGCESTARHVAKFLKVNSV
GPSDVSSEFSDAASAIEALRRCPSGLDPVLEETLPFGVAYHHAGLTVEEREIVESCYRKG
LVRVLTATSTLAAGVNLPARRVIFRQPKIGRDFIDGTRYRQMAGRAGRTGIDTKGESILV
CRPEEVKRITGIIRSNCPPLESCLSEDKNGMTHAIMEVVAGGIVQTASDIHRYVRCTLLN
STKPFDDVVKSAQDSLRWLCHKRFLEWNNETKIYSSTPLGRAAFGSSLNPEESLVVLDDL
SRAREGFVLASDLHLVYLVTPINVDLEPDWELYYERFMQLSSLEQSVGNRVGVIEPFLMH
MAHGAAMLVRGRPQRNTGLRNKSPAQAGGSSLINEQTLRVSKRFYVALMLSRLAQEIPVA
DVCEAFKVARGMVQALQENAGRFASMVSAFCQRLGWNDLEGLVAKFQNRVSFGVRAEIAE
LTSIPFVKGSRARALYKSGLRTPVAIAEASIPEIAKALFESSTWSGQDDSGLRRIQFGIA
KKIKNGARKIVLEEAEAARVAAFSAFKSLGVEVPQFTAPALPAIEDSPTRDMIVSPCGDQ
IKCNKLAFGTDAVDDKNKSSDDGASRTTYSLREEHPDSSIQMKENLGIANSAKITAQEAA
SPSSTGIIAGSSSTNVADKGPVNAYNFPGGFDCFLDQWSAVGEFSFDVHFIKKSMKPSST
LFEVFGLAICWENSPIYYCNFPKDLVTTGINDSSEMWGHFQRRWKKIADIMQHKNVKKMT
WNLKIQIQALKSAYISCQQLARFHLDHKLLDNIEVLDNSYVLLSPISVYNGLDLCLVAWV
LWPDEESRTVPNLEKLVKRRLHSEAAAAANRDGRWRNQMHKAAHNGCCRRAAQTRALYTV
LKKLLVSQNLNDLVDTIEGPLVNVLADMELWGIGADMDACLHARHIIIKKLKELEKEAYR
LAGQSFSLNATADIADILYTHLKLPVPKGCERGKLHPSTDKQSLDHLRDLHPIVPVIKEH
RTLAKLLNGTLGSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSMEEPNLQCVEHLVEFN
TGKSDKDYSIVSVVDRHQINAREFFIPTQENWLLVTADYSQIELRLMAHFSKDLMLIELL
SKPDGDVFTMIASRWVGKEEALISSKERETTKRFIYGILYGMGANSLAEQLECSTEEAAQ
KIQSFKRFFPGVSSWLHEAVASCRQKGYVETLMGRRRFLTKIMAGNSKEKAKAQRQAVNS
ICQGSAADIIKAAMIRVHSVITNRTGEVDSTDEVTRNFSEIGGKCHLILQVHDELVLEVD
PCMVQQAGRLLQICMEEAASLLENSPPALPISWSLPFNVVASCSALSMHSTKAWLLLWSV
CAFGFELAIA
NT seq 6333 nt   +upstreamnt  +downstreamnt
atggcgtcgggctcctctcaccaccaaatcgaccagttcttcccggccacgaagcggagg
tcctcgtcgcgcaaggacgacgcgccgcgacccgggccgcagcatgggagccccggcggc
gccaaggggtccctggaggggtacctcgtccggtcgccttccacccgtgccacggtggcg
gcctcggcggccctcgcgggctcgccgaggggcggggacgcgggcgccaggcggagcctc
acggccgctatggacgtcgatgtcgcctcctcccctccggcgccggcggttgatggggcc
gatttggagctcaggagattcacgacggacttcctttcccattgctgcagtgctatccca
cctttgagggatgattctgagtatcgtgagcagttggagaagaagcagaagcggagtgcg
agtcagtcgatcttggttccttgtgacaatgcctctgccaagaagcagtgcattgctcat
tgcagtggcttggaggctctaaaggaatcagatgatagtgtggccttcaagaagcaatgc
atcaatcaccatggtggctcggaggctgtggagcaggaatcagttgagggggtaaaggtg
agttgtgtgggattttcagcattgcaaagatgtagctttaccccaaatactacacagaaa
aaagttgggttttctttagcccctggggacaccccaaaatctgtatcaaggaattccctt
acttcacctggggaagaattctggaatgcagcaattgaatttgctgatggaatatctgcc
cagacagacaaggtccgtggaaagcctaagtttgatgcagcagaggataagttatcttgt
gcagtagcactatgctctaagactcttcctagagcaggaaaggatgagcatgactgtctt
aatacagtaggcagcaatgatacacatcagatggagaagttgtcaaacaaagttgaattt
ctggcagcaaagagtcagcatgtaaacagctctcctttgcctgtgaagcacctggacttc
tgtcatgaggatgacatccaagtttcaggtttgaaaaaatgtgaagaaaaaggcagaaat
gaagctgataatgtacaaacaaaccatgttgaattgaaagatggtggccttcagagaaaa
gaaaatataaggaagggttcaatagatcttgtaaatgcaatgaagacaagtgctcttgat
ttgcatacggattctgcagccatgttccgatgtcatggtgtattcaagtcaacaaccgaa
gggaatgttcactcaactcgagagggtgacaaagattctcatcaaaataaatcacttgcc
gcatattcaaatggttgtctgcctaagaaagacaccaaaagtaaatttgtttctcaagaa
gtggaagctagcacacctactagctctgttcctctgaaggaccactcaaagctatcaagt
tggctccctccagagctttgtgctgtatacatgaaaaaaggcatttcggagctgtatcct
tggcaggttgagtgcttacttgtggaaggtgtcttggagaaaaggaatcttgtgtattgt
gcatccacgagtgctggtaaaagctttgttgctgaagttctgatgttgaggaggatactg
tcaagtgggaatatggcaattcttgtccttccctatgtgtcgatatgtgctgaaaaggct
caacatcttgaacaacttcttgagccactgggtaggcatgtccgtagcttctatggaaac
caggggggaggatcgcttcctaaagatacagcagttgctgtgtgtaccatagagaaggca
aattctttggtaaataagttgttggaggatggccgtctctctgaacttggtgtaattgta
atagatgaacttcatatggttggtgaccaacacagagggtaccttttagagctgatgctg
acaaagcttcgatatgctgctggtgaagggaattcagagtcatctagtggagaaacttca
ggctctagcagtgggaagatggcaactcatggattgcagataattggtatgagtgctact
atgcccaatgttgctgcagtagctgattggcttcaagctgctctttaccaaactgacttt
cgaccagttccactggaggaatttatcaaagttggtaatcaaatatttgataaagacatg
aatgttgttcgtgtccttccaaaagtagctgatcttggtggcaaggatccagatcatatt
gttgaaatgtgtaacgaggttgttcttcagggtcattctgtgcttttgttttgctccagc
cgtaagggctgtgagtcaactgcaagacatgttgccaagttcttgaaagtaaactctgtt
ggaccaagtgatgttagttcagaattttcagatgctgcatcagctattgaagccttgagg
aggtgcccttctggattggatcctgtattggaagaaacccttccttttggcgttgcatat
catcatgctggtcttacggttgaggagagggagattgtggagtcatgttaccgtaaaggc
ctcgtccgtgtgctgactgccacttcaactttagctgctggtgttaacttgcctgctaga
cgggttatatttaggcaacctaagataggtcgtgattttattgacgggactcgctatagg
cagatggctggtcgtgctggtcgaactggaatagacacaaaaggagaaagtatacttgta
tgcaggcctgaagaggttaagaggattacaggtattattagaagcaattgtcctcccttg
gagtcctgtctctctgaagataaaaatggaatgactcatgcaattatggaggttgttgct
ggtgggattgtgcaaactgcaagtgatattcatcgatatgtgcggtgcacgctgcttaac
tccactaaaccttttgacgatgttgtgaagtcagctcaggactcccttcgctggttatgc
cataaaaggtttcttgaatggaacaatgagacaaaaatatactcctctaccccccttggt
agagcggctttcggaagttcactcaatcctgaggaatcactggttgtgcttgatgatctt
tcaagggcaagagaaggctttgttcttgcatctgatttgcatttagtttacttggtcaca
cccataaatgtggatcttgaacctgattgggaattatattacgagagattcatgcaactt
tcttctcttgagcagtcagtgggcaatcgggttggagtaattgaacccttcttgatgcac
atggctcatggggcggcaatgcttgttcgtggaaggcctcagagaaacactggtttacgc
aacaagtctcccgcacaagctggtggaagttcacttattaatgagcagacactcagagtg
tccaaacgcttttatgtggctttgatgttatcaaggcttgctcaggagattcctgttgct
gatgtttgtgaggcatttaaggttgccagaggtatggttcaggcgctgcaggaaaatgct
ggcaggtttgcttcaatggtttctgcattttgtcagagacttggttggaatgatttagaa
ggtcttgttgcaaagttccaaaatcgtgtctcttttggagttagggcagagattgctgaa
cttacatcaattccatttgtcaagggctcacgtgcaagggctttatataagtctggtctt
cgtactcctgttgccattgctgaagcatctattcctgaaattgcaaaagctctttttgaa
tcttctacttggtctgggcaagatgattctggtttacgacgaatacaatttggtatagcc
aagaagataaaaaatggagctcgcaagattgtccttgaggaggcagaagctgccagagta
gcagcattctcagctttcaagtcacttggtgtagaagttcctcagttcactgcacctgca
ctcccagctattgaggactccccaactcgagatatgatagtttctccttgtggagatcaa
attaagtgcaataagctagctttcgggaccgatgctgtagatgataaaaataaatcatct
gatgatggtgcttcaagaactacatacagtctaagagaggaacaccctgattcttccatt
caaatgaaagagaatctaggaatagctaacagtgcaaaaattactgcacaggaagcagca
tcaccttcatcaacaggaattattgctggatcgagtagtacgaatgtggctgacaaaggt
cctgtcaatgcgtataacttcccagggggatttgactgttttcttgatcaatggtctgca
gttggtgaattttcctttgatgttcattttatcaagaaatcaatgaaaccatcttccacc
cttttcgaagtctttgggttggcgatctgttgggaaaattcccccatatattactgcaac
ttcccaaaagatctagtcactactggtatcaatgattcaagtgaaatgtggggtcatttc
cagagaagatggaaaaaaatagctgacattatgcaacataagaatgtcaagaaaatgaca
tggaacttgaagatccagattcaggcacttaaatcagcttatatctcttgccagcagctt
gcaaggtttcatcttgaccataaattgctggacaatattgaagtacttgacaactcatat
gtgttgctatcaccaatctctgtttataatggattggatttatgcctggtggcatgggtt
ctttggcctgatgaagaaagcagaacagtgccaaatcttgagaagttagtcaagagacga
cttcatagtgaagctgctgctgctgcaaatcgggatggaagatggagaaatcagatgcac
aaagcagcacacaatggctgctgcagacgtgctgcacagactcgggctttgtatactgtc
ctgaagaaattacttgtttctcaaaatctcaatgatttggttgacacaatcgagggtcca
ttggtaaatgttcttgctgatatggaactttggggaattggtgctgacatggatgcttgt
ctccatgcgaggcatattataataaaaaagctaaaggaactagagaaagaagcttacaga
ctagctggccagagtttctcactaaatgcaactgctgatattgcagacattctatacaca
cacttaaaattgccagttccaaaaggttgtgagagagggaagctgcatcctagcactgac
aagcagtctctagaccatctaagggacctacacccgattgtcccagtaattaaggagcac
agaacattggccaaactgttgaatggcacattggggtccatttgttcacgtgctcaattg
tgcactcaatcacaaaggtacatcatccatggaaattggcttcagacatcaactgccact
ggccgcttatctatggaggagccaaatctgcagtgtgttgagcacttggtggaattcaat
acagggaaaagtgataaagattactcaattgtgtcagtggttgatcgtcatcaaatcaat
gcccgtgaatttttcattcccacacaggagaactggttgttggtaactgctgattactca
cagattgagctgcgtttaatggctcacttttctaaagatcttatgttgattgagcttcta
agtaaacctgatggtgatgtttttactatgatcgcttcaagatgggttggcaaagaagag
gccttgatctcttccaaagagagagagaccactaaaagattcatatacggcatcctttat
ggaatgggtgcaaactcccttgcagaacaacttgagtgcagcacagaggaagctgcacag
aaaattcaaagctttaagagattttttcctggtgtttcctcatggctacatgaagctgta
gcatcttgccgccaaaaaggatatgtggagaccttgatgggccggcgacgttttcttaca
aaaataatggctggcaatagcaaagagaaagctaaagcacagagacaagcagtaaattct
atttgccagggttctgctgctgatataatcaaggcggctatgattagagttcattcggta
attaccaacaggactggggaagttgattcaactgatgaagttacgaggaacttttcagaa
ataggtggcaagtgtcaccttattttgcaggtgcatgatgagttggtattggaagttgat
ccatgtatggtacaacaggctggaaggctgttacagatatgtatggaggaagcggcttca
ctcttggaaaattcacctcctgcactaccaatctcatggagcctgccttttaacgttgtg
gcatcttgttctgcattatccatgcattcaacaaaagcatggctgttgctgtggtccgtc
tgtgccttcggctttgaacttgccattgcatga

DBGET integrated database retrieval system