Panicum virgatum (switchgrass): 120668443
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Entry
120668443 CDS
T07260
Name
(RefSeq) solanesyl-diphosphate synthase 1, mitochondrial-like isoform X1
KO
K14066
geranyl diphosphate synthase [EC:
2.5.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120668443
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120668443
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120668443
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120668443
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Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
HEPPP_synt_1
GP24_25
Motif
Other DBs
NCBI-GeneID:
120668443
NCBI-ProteinID:
XP_039804087
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All DBs
Position
4N:complement(46326300..46331081)
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AA seq
429 aa
AA seq
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MSWRWALARRVAALAAGSGAGGAAQAQRLLTTSSGAGAALLGRQHLPLASQIRSKVVGCR
GAAFVSSRWLHDAQYQDRPDGDSRSQEHRDPFELVADDLSLVADRLRSMVAAEVPKLASA
AEYFFKVGAEGKKFRPTVLLLMASALKFPLSESTEGGVLSIIVDKLRTPHLNIAEITEMI
HVASLLHDDVLDDADTRRGVSSLNLVMGNKLSVLAGDFLLSRACVALAALGNTEVVSLMA
TAVEHLVTGETMQISTSREQRQSMEYYLQKTYYKTASLISNSCKAVAVLAGHTAEVSMLA
YEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILYAMEEFPQLHEVVDS
GFDNPANVELALDYLQKSRGIERTKELAREHANRAIKAIEALPDSDDEDVLTSRRALIDI
TERVITRTK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggcggtgggctctcgcgcgccgcgtcgccgcgctggccgccgggagcggggcc
ggcggtgcggctcaggcgcagaggctcctgacgacctcgtccggcgcgggcgccgcccta
ctggggcggcagcacctgcccctcgcctcccagattcggagcaaggtggtgggttgcaga
ggagctgctttcgtgagctccagatggctacatgatgcacaataccaggatcgcccggat
ggggattcaaggtctcaggaacacagagatccttttgaattagttgccgacgatctatca
ctcgttgcagatagattgcgatccatggtggctgctgaggtccccaaactggcatcagca
gctgagtactttttcaaagtgggagctgaggggaaaaaattccgacctacggttttgtta
ctgatggcatcagctctcaaattccccctgtcagaatcaacagaaggtggagttctcagc
atcatagtggataaactccgcacaccacatctgaacattgcagagataacggagatgatt
catgtcgcaagccttctgcatgatgatgttctagatgatgctgatactaggcgtggtgtc
agttcgttgaatcttgttatggggaacaagctctctgtattggcaggtgacttcctcctg
tctagagcatgtgtggcacttgcagcacttggaaacacagaggtggtatccctaatggca
actgctgtagaacatctagttactggtgaaactatgcagatctcaacaagcagagagcaa
cgacaaagcatggaatactacctgcagaagacatactacaaaacagcatcactgatatca
aatagttgcaaggctgttgctgttcttgcggggcacactgctgaggtctcaatgcttgcg
tacgaatatggtcgaaacttgggtttggcgttccagttgattgacgatgttctagatttc
actggcacatccgcatcccttgggaagggttcattatctgatattcgccatggaatcatt
actgccccaattctatatgcaatggaggaattcccgcaactacatgaagttgttgacagc
ggtttcgacaatcctgcaaatgttgaacttgcccttgactatctccagaagagccgtgga
attgaaaggacgaaagagcttgcgcgggaacatgctaaccgtgcaatcaaagctatagaa
gccctcccggatagtgacgacgaggatgttctgacttcgagacgcgctcttattgacata
acagagagagtcatcacaaggacaaagtag
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