Panicum virgatum (switchgrass): 120672631
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Entry
120672631 CDS
T07260
Name
(RefSeq) asparagine--tRNA ligase, cytoplasmic 1-like
KO
K01893
asparaginyl-tRNA synthetase [EC:
6.1.1.22
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120672631
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120672631
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120672631
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.22 asparagine---tRNA ligase
120672631
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (A)
120672631
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120672631
Prokaryotic type
120672631
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
WHEP-TRS
DUF4131
tRNA-synt_2d
Motif
Other DBs
NCBI-GeneID:
120672631
NCBI-ProteinID:
XP_039809070
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Position
5N:complement(25460612..25464720)
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AA seq
561 aa
AA seq
DB search
MATDAVAAAMAASSLCDNLEPATVRTGIRDVLAAGAARAGERVVVGGWVRTGREQGKGTF
AFLELSDGSCASTLQVIVDAAVRPLARLTATGTSVLVEGEIKEPPEGTKQNVELKVSRVL
EVGEVDAAAYPLPKGKVKLTLEKLRDVVHLRSRTNTIGAVARIRHQLAFATHRFFHENAF
LYVHTPIITTSDCEGAGEMFQVTTLFSQAEKTEKELKENPAPSESEIEAAKVIVKEKGDA
IAQLKAAKASKQDISAAVDGLHRAKEHVSKLEERSKLKPGIPRWDDGSIAFENDFFKRQA
FLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFANLQDDMNCA
EKYIQYLCKWLLDHCREDMEFMVKNYDKSAIERLELVSSTPFVRISYTKAVELLKNVTDK
KFDNKVEWGIDLASEHERYLTEDIFKKPVIVYNYPKGIKAFYMRLNDDDKTVAAMDVLVP
KVGELVGGSQREERLDVLKQRILDAGLPLEPYEWYLDLRRFGSVKHSGFGLGFERMILFA
TGMENIRDVIPFPRYPGRADL
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacgccgttgcggcggcgatggctgcgtcctccctctgcgacaacctggag
cccgccaccgtccgcaccggcatccgcgacgtcctggccgcgggcgccgcgcgggccggg
gagcgcgtcgtggtcgggggctgggtccggactggcagggagcagggtaagggcaccttc
gcctttctcgagctcagtgacggctcctgtgcttccacgctccaggtgattgtcgacgcc
gccgtgcgcccgctcgcgcgcctcaccgccacgggcacctccgtgctcgtcgagggcgag
atcaaggaaccacccgaggggaccaagcagaacgtcgagctcaaggtcagccgcgtcctc
gaggttggcgaggtcgacgccgccgcctacccgctgcccaagggcaaggtcaagctcacg
ctcgagaagctcagggatgtcgttcacctccgttcgcgcactaacacgattggtgcagtt
gctagaattagacatcagttagcctttgcaacacacaggttcttccacgagaatgcattt
ctctatgtacatacaccaataataactacaagtgactgtgagggtgctggtgagatgttc
caagtaacaactttgtttagccaggctgaaaaaactgaaaaggaattgaaagagaaccct
gcaccttctgaatctgaaatcgaggcagctaaagttattgtcaaggagaaaggagatgcc
attgcacagcttaaagctgcaaaagccagcaaacaagacatatcagctgctgttgatggg
ctccatagggcaaaagaacatgtttcaaagctggaggagaggtctaagttaaagcctggt
attccacgctgggatgatgggtcaatagcttttgaaaatgacttcttcaagcgtcaagct
tttctgactgtgtctggacagcttcaggtcgagacatacgcatgtgctcttagtagcgtg
tatacctttggaccaacattccgggcagaaaactcacatacatcacgacatttggcagag
ttttggatggttgaaccagaaatcgcatttgcaaacttgcaggatgatatgaactgtgca
gaaaaatatatacaatacctttgcaagtggctgcttgaccattgccgggaagacatggaa
ttcatggtgaaaaattatgataagagtgcaattgaacgtctggagctcgtttcctcgact
ccttttgtgcggatttcatatacaaaggctgtggagctcttgaaaaatgttactgacaag
aagtttgataacaaagttgaatggggaattgatttagcctctgagcacgagaggtatttg
acagaggatatatttaagaagccagtgattgtttataactatccgaaaggaataaaggca
ttttatatgaggctcaatgatgatgacaagacggtggctgcaatggatgttcttgtgccc
aaggttggcgagttagttggtggaagccaaagggaggaacgtctagatgttctcaaacag
aggatacttgacgctggcttgcctttggaaccctatgaatggtacttagacctccgccgc
tttgggtctgtaaagcacagcggctttgggttgggtttcgaaaggatgattctttttgcc
actggtatggagaacatcagagatgttatacccttcccgaggtacccaggaagggctgac
ctgtaa
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