Panicum virgatum (switchgrass): 120673087
Help
Entry
120673087 CDS
T07260
Name
(RefSeq) malonate--CoA ligase-like isoform X1
KO
K18660
malonyl-CoA/methylmalonyl-CoA synthetase [EC:
6.2.1.76
6.2.1.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00280
Valine, leucine and isoleucine degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120673087
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
120673087
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.76 malonate---CoA ligase
120673087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120673087
NCBI-ProteinID:
XP_039809707
LinkDB
All DBs
Position
5N:57829465..57836880
Genome browser
AA seq
625 aa
AA seq
DB search
MRTQGWGLGAVARLMTPFNRRAAHASSSHLLRHCCCSPYSTVLLRLRRHFASSSSPAYIA
RQNTHTFMEVVQEVLKHGSANGVRAAIRADKKSYSLVQLIAASLDVHKILCSKNMTRNGI
QSSSLEGINGKGFLHGARVGIVAKPSPEFVAGVFGTWLSGGVAVPLALSYPEAELLHVMN
DSDISMILSTKEHHEMMENLSIKCSAYCSLLPSITSIPSEINPQEPSSNEVTSSVSSLIT
EANSSNKIKGDDPALILYTSGTTGKPKGVVHTHKGILSQVQILSEAWGYRSEDQFLHCLP
LHHVHGLFNALFAPLYSGSVVEFIPKFSVSGIWQRWRESYPSDASKNDDAITVFTGVPTM
YTRLLQGYDNMDPDQQSACSYAAKQLRLMMCGSSALPSPLMKRWEEVTGHRLLERYGMTE
FVMALSNPLHGIRKEGTVGKPLPRVEAKIIMDDGTETTTGVGELCIRSPSLFKEYWKRPE
VTSESFIDGGFFKTGDTVTLDEEGYFIILGRTNADIMKVGGYKLSALEIEAVLLEHDAVL
ECAVLGLPDEAYGEVVCAIIVPKEDAKKMAEQDSKPALTLETLTSWSKDKLAPYKIPTRL
YLWDSLPRNAMGKVNKKELKKLLGA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcggacgcaggggtgggggctcggggcggtggcgcgcttgatgacgccattcaatcgc
cgcgcggcccacgcctcctcctcccacctgctccgccactgctgctgctccccttattcc
accgtcctccttcgcctccgacgccacttcgcctcttcctcctccccagcatacatcgcc
agacagaacacccatacattcatggaggtggttcaagaagtccttaagcatggctcagca
aatggcgtccgtgcagctataagagctgacaaaaagagttacagccttgtccagcttatt
gcagcttccctggatgtccacaaaattttgtgcagcaaaaatatgactcggaatggaata
caaagttcttctttggaaggaataaatggaaaaggattccttcatggagctcgtgttggc
attgtggctaaaccctctcctgaatttgttgctggggtatttggaacctggctttccggt
ggagttgcagttccccttgcacttagctatccagaagctgagcttcttcacgtcatgaat
gattcggatatttcaatgattttaagcaccaaggaacatcatgaaatgatggagaacctt
tctatcaaatgttctgcttattgttctctccttccatctatcactagcataccttcagaa
ataaatccccaagaaccttcaagcaatgaggtgacttcatcagtctctagtttaatcact
gaggccaacagttcaaacaaaatcaaaggagatgatcctgctcttatcctttacacaagt
ggcacaactgggaaaccaaaaggagtcgttcacacccacaagggcatcctttctcaggtc
caaattctatcagaagcatggggatatcgaagtgaagatcaatttctgcactgtctcccg
ctgcatcatgtgcatggccttttcaatgctctatttgcacccctctattccggatcggtg
gttgagtttattccgaaatttagcgtaagcgggatatggcagagatggagggaatcatat
cccagtgatgccagtaaaaatgatgatgccattacagtatttactggagttccaaccatg
tatacacgtctgctgcaagggtatgataatatggatcctgatcaacaatccgcctgttct
tatgctgcaaagcagttgaggttaatgatgtgtgggtcatcagctctcccttccccactt
atgaagcggtgggaggaagtgacaggtcaccgtcttttggaacgttatggcatgactgag
tttgtcatggcactgtctaatccattgcatggtatccggaaagaaggtacagttggtaaa
cctcttccacgtgttgaggctaagattattatggatgatgggactgaaactacaactgga
gttggtgagctctgcattagaagtccatcccttttcaaggagtactggaaaagaccagag
gtgacatcagaatccttcatcgatggtggattcttcaagacaggtgatacagtaacttta
gatgaggaaggatacttcataattttaggacgcacaaatgctgacattatgaaagttggt
ggctataagttgtcagcactagaaattgaggccgtgctgctagagcatgacgctgtattg
gaatgcgctgtccttggcttgcctgatgaagcctatggggaggttgtatgtgcaataatt
gtgcctaaggaggatgcgaagaaaatggcggagcaggactcaaagccagcactaaccttg
gaaacattgacaagttggtcgaaagataagcttgctccatacaagattccaacaagattg
tacttgtgggattctcttcctcgcaatgccatgggaaaggttaacaagaaggagctgaag
aaattgttaggagcttag
DBGET
integrated database retrieval system
