Panicum virgatum (switchgrass): 120673113
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Entry
120673113 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120673113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120673113
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120673113
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
120673113
NCBI-ProteinID:
XP_039809738
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Position
5N:5163687..5173147
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AA seq
1229 aa
AA seq
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MQPRRQQQQSILSFLQKPPRDRPGAGDGTPPEKPPRPPAGSVASIMERLVRPQPSQGRNQ
DGSQVGHLDWKTLLGRNQVPSNGRSSALFSGPCNGEYSGATMFPKQGSGMTPSREPQKYP
LRSSTDESFQASMLLPEFGLNQTPRQEHPKKLLSESPNNGCIQATSLFEDFDIQTPSQVS
SKKIFLGPARGADTPLTDHGSDQTHLQHSAKKFSLVSANGEYTRAATTFVLNSNGIRTEE
SSKKLCPESSVPLYIKPTNLFAELEANESPLNNNLKSSSILMNDKHIGATSALFPELDSS
PLKPETPAMRAVIPRLKRVQEEQGVADNKQCFPLWFLNKKMKSAHCSPVEKKDHDEMADS
VRSKFEWLNPSTIRDANRRRPDDPLYDKSTLFIPPDSLRKMSTSQKQYWNIKCKYMDVVL
FFKVGKFYELYELDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLVARGYKVGR
IEQMETANQAKARGSNSVIERKLCHVSTPSTAVDSNIGTDAVHLLALKEVTLSSSGSRVY
GFTFLDYAALKIWVGSLQDDDSSAALGALLVQVSPREIIYETSGLSKETHKAIRKYASAG
SVKMLLTPLPGIDFSDVSQIRMLIHSKEYFTASAESWLCALDCALNRDAVICALGGLIGH
LTRLMLHDALKNAEVLPYHVYKTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCVTA
SGKRLLRRWICHPLKDIDAINKRLDVVEAFIQNCGLGPTTLGYLRKIPDLERLLGQVRST
VGLSSAVRLPFVGEKILKKRIKTFIMLINGLRNALDLLNDLQRADHGVSALYKAVEIPTL
SSLRELIHKFEEEVQNEFPHYQDLDVKDGDGNTLAVKVEHFVGKASEWSLVINAVSTIDV
LRSFAAMTLSSFGAMCRPHVLLKDDVPILRMKGLWHPYAFAESANGLVPNDLTLGQDLSG
LNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCTSCELTLADSIFTRLGATDRIM
SGESTFLVECTETASILQNATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVERVRCRLL
FATHYHSLTKEFASHPHVSLQHMACMFRPRSGAHDSNGEKELTFLYRLTSGACPESYGLQ
VATMAGIPTSIVEKASVAGQVMRSKIIGNFKSSEERAEFSTLHEEWLRTAVAVIVKDGHL
DEDVMDTLHCVSQEVKAHFKKDRMSVHRH
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcggcggcagcagcagcagtcgatcctctcgttcctccagaagccgccgcgg
gatcgccccggcgccggggatggcacgccccccgagaagcccccgcggcctcccgcgggg
tcggttgccagcatcatggagaggctcgtgcgcccgcagccgtctcaggggagaaatcaa
gatggttcccaggttggacatttggattggaaaaccttgcttgggagaaatcaagttcct
tcaaatgggcgctcaagtgcattgttctcaggaccctgcaatggtgaatacagcggagca
accatgtttccaaaacaaggttcgggtatgactccctcacgggaaccccagaaataccca
ttgaggtcctccactgatgaatcttttcaagcaagcatgttgctcccagaatttgggcta
aatcaaactcctcgtcaagagcatccaaagaagttactctcagagtctcctaataatggc
tgcattcaggctacatccttatttgaagactttgacatacaaactccttcacaggtttcc
tcaaagaaaatcttcctagggcctgctcgtggagctgatacacctttaacagatcatggt
tcagatcaaactcatttacagcattcagcgaagaagttctcattggtttctgctaatggt
gaatatactagagcagcgacaacatttgtgctaaattcaaatggtatccgtacagaggaa
tcttcaaagaagctatgcccagagtcttcagtccctttgtatattaaaccaacaaatttg
tttgcagaacttgaggcaaatgaaagtccattgaataataacttgaaaagttcctccatt
cttatgaatgataaacacattggagcaacttctgcactgtttccagaacttgattctagt
cctctgaaaccagaaacaccagcaatgcgagcagtcattcctcgcctgaagcgagttcaa
gaagaacaaggtgtggctgacaacaaacagtgctttcctttgtggttcttgaacaagaag
atgaaatcagctcattgttcacctgttgaaaagaaggatcatgatgagatggcagatagt
gtgcgtagcaagtttgagtggctgaatccatctaccatcagggatgcaaatagaaggcgt
ccagatgatccactttacgacaagagtacactttttattccacctgattcattgagaaag
atgtcaacatctcaaaagcaatactggaatattaagtgtaaatacatggatgttgtcctc
tttttcaaagtgggaaaattttatgagctctatgagctggatgctgagattggccaaaaa
gaacttgactggaaaatgactgttagtggggtgggcaagtgccgacaggttggcatttca
gaaagtgggatagatgatgctgtcgataagcttgtagctcgggggtataaagttggaaga
atagagcaaatggaaactgcaaaccaggccaaagctagaggatcaaattcagttattgaa
agaaagctgtgtcatgtgtccacaccgtccactgcagttgatagcaacattggcactgat
gctgttcaccttcttgcattgaaagaggttaccctatcttctagtgggtctcgggtctat
ggattcactttcctagactacgctgctcttaaaatttgggttggatcactccaagacgat
gattcctctgcagctttgggggctttgttggtgcaggtttctcctagagaaataatctac
gaaacctcaggcctctcaaaagaaactcataaagcgataagaaaatatgcctcagcagga
tctgtaaagatgctgctgacccccctacccgggatagatttctctgatgtttcacaaatt
cgaatgttaatacattcaaaagagtactttacagcatcagcagagtcgtggttatgtgct
ttagattgtgcattgaatcgagatgcagttatttgtgcgcttggtggacttattggtcat
ttgactaggctcatgttacatgatgccctgaaaaatgcggaagtcttaccataccatgtg
tacaaaacctgtctaaggatggatggccagactctcgtgaaccttgagattttcagcaac
aacttcgatggcggttcatcaggtactttatataagcaccttaatcactgtgtcacagca
tctggtaagaggctgctaagaaggtggatttgtcatccacttaaggacattgatgctatc
aataaaaggctcgatgttgttgaggccttcatccagaactgtgggctaggccctacaaca
cttggatatctccgcaaaatacctgatcttgagagattgttaggacaagttagatccact
gttgggttatcatctgcagtcagattgccctttgttggagaaaagattttgaagaaacgg
atcaaaacatttataatgcttatcaatggcctccggaatgcacttgatttattaaatgac
ttacaaagagcggatcatggtgtctcagcactttataaggctgtagagattccaacattg
agctcccttcgtgaattgatccataaatttgaagaggaagtacaaaatgaatttccacat
taccaggaccttgatgtcaaagatggtgacggaaacactttggctgttaaagtggaacat
tttgttggaaaggcttcggaatggtctttggtgatcaatgctgtgagcactattgatgtg
cttagatcctttgctgcaatgacactgtcatcatttggcgccatgtgcagaccacatgta
ctactaaaagatgatgtgcctatacttcggatgaagggtctatggcatccctatgctttt
gcagaaagtgccaatgggttagtaccaaatgacttaacccttggtcaggatttatctggc
ctcaatcgttttgcattgttgttgacgggtccaaatatgggtgggaaatctacaatcatg
cgtgccacctgccttgctattgtacttgcccagcttggctgttatgtcccctgcacatca
tgtgaattgacccttgcagattccatatttacgcgtcttggtgcaacagatcggattatg
tctggtgaaagcacatttcttgttgaatgtacagagactgcttctattcttcagaatgca
actgaggattctcttgtattacttgatgagcttggtagaggaacaagcacatttgatgga
tacgcaattgcatatgctgtgttccgccacctggtggagcgggtgcgatgccgcctgctc
ttcgccactcactaccactctctgacaaaggagttcgcctcccaccctcacgtgagcctc
cagcacatggcctgcatgttcaggccaaggagcggtgcccacgacagcaatggtgagaag
gagctcaccttcctctaccgtctcacctcaggggcatgcccagagagctatggcctgcag
gtcgccacaatggcagggatcccaacgtcgatagtggagaaagcatccgtcgcaggccag
gtgatgaggtcaaagatcatcggaaacttcaagtcgagcgaagagcgtgcggagttctcg
accctccatgaagagtggctgaggacggccgtggcggtcatcgtgaaggacgggcaccta
gatgaggacgtcatggacacgttgcactgcgtctcgcaggaggtgaaggctcacttcaag
aaagacagaatgagcgttcatcgccactga
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