Panicum virgatum (switchgrass): 120673640
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Entry
120673640 CDS
T07260
Name
(RefSeq) lycopene epsilon cyclase, chloroplastic-like
KO
K06444
lycopene epsilon-cyclase [EC:
5.5.1.18
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120673640
Enzymes [BR:
pvir01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.18 lycopene epsilon-cyclase
120673640
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Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
HI0933_like
GIDA
Thi4
FAD_binding_2
Pyr_redox_3
FAD_binding_3
Motif
Other DBs
NCBI-GeneID:
120673640
NCBI-ProteinID:
XP_039810519
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Position
5N:41262228..41266485
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AA seq
537 aa
AA seq
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MWLSGAAISAPLGCRGLPRGAVGGGGKARRAEAERWRRAGAGRRSGGAKVRCVATEKHDE
TTAAAAVGVEFADEEDYRKGGGGEILYVQMQATKPMESQSKIASKLLPISDENSVLDLVI
IGCGPAGLSLASESAKKGLTVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVY
LDNNKPILIGRSYGRVHRDLLHEELLRRCYEAGVTYLNSKVDKIIESPDGHRVVCCERGR
EILCRLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDCFQ
EKFSHSEQENPTFLYAMPMSSTRVFFEETCLASKDAMPFDVLKKRLMYRLDAMGVRILKV
HEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASLISDILRNR
VPAQYLAGSSQNYSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFEAFFRV
PKWMWQGFLGSTLSSVDLILFSFYMFAIAPNQLRMNLVRHLLSDPTGSTMIKTYLTL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtggctctcgggtgcggcgatctccgcgccgctcggctgccgcgggctgccgcgcggc
gcggtcggcggaggcggcaaggcgcggagggcggaggcggagaggtggcggcgggcgggc
gcgggccggcgctcgggcggcgcgaaggtgaggtgcgtggcgaccgagaagcacgacgag
acgacggcggcggcggcggtcggcgtggagttcgcggacgaggaggactaccgcaagggc
ggaggcggcgagattctctacgtgcaaatgcaggccaccaagcccatggaaagccagtcc
aagatcgcctcaaagctgctgcccatatctgatgaaaattcagtactcgatttggttatc
attggctgtggtcctgccggtctttctctagcttcagagtcagccaagaaagggctcact
gttggtcttattggccctgaccttccattcacgaacaactatggtgtgtgggaggatgaa
ttcaaagatcttggtctagagagctgtatcgagcatgtctggaaggatactattgtctac
ctagacaataacaaaccaatactgattggccgttcttatggcagggtgcaccgtgacctg
ctccatgaggagttgttgagaagatgctatgaagctggcgttacatacctcaactcaaaa
gtggacaagatcattgaatctccagatggtcatagagtagtctgttgtgaaaggggccgt
gagatactctgcaggcttgccattgttgcttcaggggcagcatctggtaggcttctggag
tatgaggttggaggtccccgtgtctgtgtacagactgcatatggagtagaagttgaggtg
gaaaacaatccatatgatcccagcttaatggttttcatggactacagagattgtttccaa
gagaaattctcacactctgaacaagaaaatccaactttcctgtatgctatgcctatgtcg
tccacacgagttttctttgaggaaacatgtttagcctctaaagatgcgatgccctttgat
gtacttaagaagagattaatgtatcggttggatgcgatgggagttcgaatcctgaaagtt
cacgaggaggaatggtcctacattcctgttggagggtccttacctaatacagatcagaaa
aatcttgcatttggtgctgcagcaagtatggtgcatcctgcaactggctactcagtggtc
agatctttatctgaggctccaagatatgcctctttaatatccgatatcttaaggaaccga
gttcctgcacaatatttggcaggaagttctcaaaattacagtccatcaatgctcgcatgg
agaacactatggcctcaagaaagaaaacgtcagcgatccttcttccttttcgggttggca
ttgataatccaactgaataatgaaggcatacaaacattcttcgaagcctttttcagggtg
ccaaaatggatgtggcaagggttcttgggctcaaccctttcatcggtggatctaatactg
ttttcattctacatgttcgccatagctccgaatcaattgcgaatgaacctggtcagacat
ctcctctctgacccgacaggctcaacaatgataaagacctacctgaccttgtaa
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