Panicum virgatum (switchgrass): 120675293
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Entry
120675293 CDS
T07260
Name
(RefSeq) ABC transporter B family member 11-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120675293
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120675293
04147 Exosome [BR:
pvir04147
]
120675293
04090 CD molecules [BR:
pvir04090
]
120675293
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120675293
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120675293
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120675293
CD molecules [BR:
pvir04090
]
Proteins
120675293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_29
AAA_16
Zeta_toxin
AAA_15
RsgA_GTPase
AAA_21
DUF87
AAA_30
AAA_5
AAA_24
APS_kinase
AAA_7
AAA_25
DLIC
Motif
Other DBs
NCBI-GeneID:
120675293
NCBI-ProteinID:
XP_039812363
LinkDB
All DBs
Position
5N:52681712..52688403
Genome browser
AA seq
1272 aa
AA seq
DB search
MHAAAAPGGRDGEEKKEGEKKGNGGGGDAGDKRVPFTGLFRYADGTDVLLMLLGTVGALA
NGVTQPVMTVIFGQVINAFGGSVATGDVLHRVNKAVLNFVYLGIATAVVSFLQVSCWTMT
GERQATRIRSLYLKSVLRQEIAFFDVEMTTGQVVSRMSGDTVLVQDAIGEKVGKFQQLIA
TFIGGFVVAFVKGWLLSLVMLASIPPIVIAGGFVSKMLSRISSKGQTSYGDAGNVVEQTL
GNIKTVVSFNGEKQAIATYNKLIHKAYKAAVEEGITNGFGMGSVFFIFFSSYGLAIWYGG
KLILSRDYSGGDVINILFAIMTGAMSLGNATPCMAAFAEGQSAAYRLFATIKRKPEIDPD
DPTGKQLEDIKGDVDLKDVYFSYPARPEQLIFDGFSLHVSSGTTMAIVGESGSGKSTVIS
LVERFYDPQAGEVLIDGINIKSLRLDWIRGKIGLVSQEPLLFMTSIKDNISYGKEDATIE
DIKRAAELANAANFIDKLPNGYDTMVGQRGAQLSGGQKQRIAIARAIIKDPRILLLDEAT
SALDVESERIVQEALNRIMVNRTTLVVAHRLSTVRNADCISVVQQGKIVEQGPHDELIMN
SDGAYSQLIRLQESQEEEVQKLDRHMSDPRSKSRSLSLKRSISRVSAGNSSRHSLTLPFG
MPGSVELLEGNDANRENQKEQVNDREAPKKAPMGRLAGLNKPELPILLLGALAAGVHGVL
FPMFGLLLSNAIKTFYEPPHELRKHSSFWGLMCVVLGITSIVSVPMEYFLFGVAGGKLIE
RIRALSFQSIVHQEVAWFDDPKNSSGALGAKLSVDALNVRRLVGDNLALLAQVTSTLITG
FVIAFVADWKLTLIILCAMPLSGAQGYAQIKFLKGFSQDAKMLYEDASQVATDAISSIRT
VASFCAEKRVMTIYDHKCEASKNQGVRTGMVGGLGFGFSFMMMYLTYGLCFYVGGQFVRH
NKSSFGDVFKVFFALMMATIGISQTSALASDSTKAKDSSISIFALLDRKSKIDSGSDEGL
TLDEVKGDIDFRHVSFKYPSRPDVQIFSDFTLHIPSGKTVALVGESGSGKSTVVSLLERF
YNPDSGAISLDGVEIKSLKVNWIRDQMGLVGQEPVLFNDTIRANIAYGKHKVVTEEEIIK
VAKAANAHEFISSLPQGYDTTVGERGVQLSGGQKQRVAIARAILKDPRILLLDEATSALD
AESERIVQDALDNVMVGRTTIIVAHRLSTIKSADTIAVLKDGVIVEKGRHETLMNIKDGF
YASLVELRSASS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccgcggcagctccgggagggagggatggcgaggagaagaaggaaggagagaag
aaggggaacggcgggggcggcgacgccggcgacaagagggtgccgttcacggggctgttc
cggtacgccgacggcacggacgtcctgctgatgctcctcggcacggtgggggcgctggcc
aacggcgtcacgcagcccgtcatgacggtcatcttcggccaggtcatcaacgccttcggc
ggctccgtcgccacgggcgacgtcctacaccgcgtcaacaaggcagttctgaattttgtc
tacctgggcattgcaacagctgttgtttcctttctccaggtgtcatgctggacaatgaca
ggagaaagacaggcaacacgcattcgatctctatacctcaaatctgtcttgaggcaagaa
atagcattctttgatgtagaaatgacaacagggcaagttgtttcaaggatgtctggtgat
actgtgttggttcaggatgccattggtgagaaggtcggcaagttccaacaacttattgcg
acctttataggtggctttgtagtagcattcgtaaaaggatggcttttatctcttgtcatg
ttggcatccatacctccaattgtcattgctggaggatttgtctcaaaaatgctctctaga
atctctagcaaggggcaaacatcatacggcgatgcaggaaatgtagtcgaacagacgctt
gggaacattaaaacagtggtctcgttcaacggtgagaagcaggctattgcaacctacaat
aaactcatacacaaggcatataaggcagctgttgaggaaggaattacaaatggttttggc
atgggttctgttttctttatatttttctcaagctatggattagccatatggtacggtggc
aagttgattcttagcagagattactcaggaggagacgtcatcaacatcttgtttgctata
atgactggggcaatgtctttaggtaacgcaacaccatgcatggcagcctttgcagaagga
caatctgcagcatacagattgttcgcaacaatcaagaggaaaccagaaattgaccctgat
gacccaaccggtaagcagttagaagacatcaagggtgatgttgatctaaaggatgtgtac
ttcagctacccagcaagaccagagcaactaatatttgatggattctcattacatgtgtct
agcggcactacaatggctatagttggggagagtggaagtggcaaatcaactgtgataagt
cttgtagagaggttctatgacccacaggctggtgaagttttaattgacgggattaacatt
aagagtttgcgacttgattggataagagggaagatcggtcttgttagccaagagccgttg
ctctttatgacatctatcaaagataacatatcatatggaaaagaggacgcaacaattgaa
gatatcaaaagagcagctgagcttgctaatgcagcaaatttcattgataaattgcccaac
ggctatgacacaatggttggccaacgaggtgctcagctctccgggggccaaaagcaaagg
atcgctattgcaagagcaataattaaagaccccagaattcttctgttagatgaggcgact
agtgcattggatgtggagtcagagcggattgttcaagaagcgctgaataggatcatggtg
aatagaacaacactagtggttgcacaccgtctaagtactgtgaggaatgctgattgcata
tcagttgttcaacaagggaaaattgtcgaacaaggtccccatgacgaattgataatgaat
tctgatggtgcttattctcaacttattcgtctgcaagaaagccaagaagaggaagttcag
aaattagatcggcacatgtctgatccaagatctaaaagtagaagcctctcattgaagcgg
tcgataagcagagtttccgcaggaaacagtagtcgccattctttgacgctcccatttggt
atgcctggttcagttgagttgcttgaaggaaatgatgcaaacagggagaatcagaaagaa
caggttaatgatagagaggcccctaagaaagctcctatgggacggctagctggcctaaac
aagccagagctaccaattcttctgttaggagcactagcagctggagtccatggagtgctt
tttccaatgtttggtctactgctctccaatgccatcaaaactttctatgagccgcctcat
gaactaagaaagcattcaagcttttggggtttgatgtgtgttgtgctgggtattacatcg
atagtatcagtaccaatggagtatttcttatttggagtagccgggggaaagcttattgag
cgtattcgtgccttgtcatttcagagcattgtgcaccaagaagttgcttggtttgatgat
ccaaaaaactccagtggagcgcttggtgcaaagttgtcagttgatgctctgaatgtccga
cgattagtgggtgataacttggccttgttggctcaggtcacctcaacactaatcactgga
tttgtcattgcttttgtggcagactggaagctcacattgatcatcctttgtgcaatgcca
ctatcgggtgctcaaggttatgcacaaataaagttcttgaaaggcttcagtcaagatgcc
aagatgctgtatgaagatgcaagtcaagtggctactgatgcaatcagtagtatcaggaca
gtagcttctttctgtgctgagaaaagagtcatgacaatctatgatcataaatgtgaagct
tcaaagaatcaaggggtcagaacaggaatggtcggtggccttggttttggtttctcattc
atgatgatgtaccttacatatggtctttgtttctatgttggagggcaattcgtgcgtcat
aacaaatctagttttggagatgttttcaaggttttctttgcattgatgatggcaacaatt
ggcatatctcaaacaagtgcattggcttctgattctacgaaggcaaaggattcatctatc
tccatatttgctttattggaccgaaagtcaaaaatcgattcaggcagtgatgaaggtttg
acattagatgaggtcaagggtgacatcgacttccgacatgttagcttcaagtatccgagc
cgtccggatgttcaaatcttcagtgattttaccctgcacattccctccggaaagactgta
gcacttgtgggagagagtggcagtggaaaatcaacagttgtttctttgctggaaagattc
tacaatcctgactctggtgcaatctcattggatggggtagaaatcaagagcctaaaagtc
aattggataagggaccaaatggggctggtgggccaagagcctgtgctcttcaatgacaca
atccgcgccaacatagcttatgggaagcataaggtggtcactgaggaggagatcatcaag
gttgcaaaagcagccaatgcgcatgaattcatatcaagtcttccccaggggtacgataca
actgttggagagaggggggttcagctatccggtggccagaagcagcgggtggccattgca
cgggccatactaaaagatcctaggattcttcttcttgatgaggcaacaagcgccttggat
gctgagtctgagcgcattgtgcaagatgccttggataatgtcatggttggcaggaccaca
attattgtggcgcaccgcctctcaacgatcaaaagtgctgatactattgcagtactcaag
gatggtgtgatagtggagaaaggaagacatgagacactgatgaacatcaaagatggattc
tatgcttcactagttgaacttcgttcagcttcatcgtag
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integrated database retrieval system
