Panicum virgatum (switchgrass): 120675943
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Entry
120675943 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120675943
09124 Replication and repair
03420 Nucleotide excision repair
120675943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120675943
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120675943
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120675943
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120675943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
120675943
NCBI-ProteinID:
XP_039813078
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Position
5N:complement(55733801..55736052)
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AA seq
177 aa
AA seq
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MSTSSVLSDEFIAHCLGLIPLTSAAAMQMRFSRDCNVCDGDGFCEYCSVEFLLSARATDS
DQTLEVTSNDLRSADPKVCPSTRLAPSSRRSINTDFEPNAGEQRGILTVKLNRGQELRLH
SIARKGIGKDHAKWSPAATVTFMYEPDIDTLALDEKRSWVESSPTKVFHLDPITKQY
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacttcctccgtcctcagcgacgagttcattgcgcactgcctggggctcatcccc
ctcacctccgccgccgccatgcaaatgcgcttctcccgggactgcaacgtttgcgacggc
gacggcttctgcgagtactgctccgtcgagttcctcctctccgcgcgtgccaccgactcc
gaccagacgctcgaggtcacatccaacgacctgaggtccgccgaccccaaggtctgcccg
tcgaccagactcgcacctagcagcaggcgctcaatcaacactgacttcgagcccaacgct
ggggagcagaggggaatacttactgtaaagctgaatcggggtcaagaactgaggcttcat
tccattgctaggaaaggaatcggcaaggaccatgccaaatggtcaccagctgctaccgtg
actttcatgtatgagcctgacatcgatacattggcgcttgatgagaaaagaagttgggta
gaaagcagccctacaaaagtatttcaccttgatcctattaccaaacagtactga
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