KEGG   Panicum virgatum (switchgrass): 120676315
Entry
120676315         CDS       T07260                                 
Name
(RefSeq) tubulin beta-5 chain
  KO
K07375  tubulin beta
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04145  Phagosome
pvir04814  Motor proteins
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    120676315
  09142 Cell motility
   04814 Motor proteins
    120676315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120676315
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:pvir04812]
    120676315
   04147 Exosome [BR:pvir04147]
    120676315
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Microtubules and associated factors
    Other tubulins
     120676315
Cytoskeleton proteins [BR:pvir04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    120676315
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120676315
  Exosomal proteins of colorectal cancer cells
   120676315
  Exosomal proteins of bladder cancer cells
   120676315
SSDB
Motif
Pfam: Tubulin Tubulin_C Tubulin_3 Tubulin_2 Misat_Tub_SegII
Other DBs
NCBI-GeneID: 120676315
NCBI-ProteinID: XP_039813485
LinkDB
Position
5N:16283302..16287710
AA seq 445 aa
MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV
PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPCG
LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADEEGDYEDEEVIQDE
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgagggagatcctccacatccagggcggccagtgcggcaaccagatcggctccaagttc
tgggaggtggtgtgcgacgagcacggcatcgaccccaccggccgctacgtcggcacctcc
gatctccagctcgagcgcgtcaacgtctactacaatgaggcctcatgcggccgcttcgtg
ccgcgcgccgtgctcatggacctcgagcccggtaccatggacagcgtccgcaccgggccc
tacggccagatcttccgccccgacaacttcgtcttcggtcagtctggtgctgggaacaac
tgggccaagggccactacactgagggagctgagcttatcgactccgtgcttgacgtcgtg
aggaaggaggctgagaactgcgattgtctccaaggcttccaagtgtgccattcccttgga
ggaggcactggatctggaatgggcactcttcttatctcaaagatcagggaggagtaccct
gataggatgatgctcacattttctgtcttcccttcgcctaaggtgtcagatactgttgtt
gagccatacaatgcaacattgtctgtgcatcagttggtggagaatgcggatgagtgcatg
gttcttgacaatgaggctctttatgacatttgtttccgcactctgaagctaaccactcct
agctttggagacctgaatcacttgatcagtgcgacaatgagcggtgtcacttgctgcctc
cggttcccaggacagctgaactctgaccttcgcaagcttgcagtcaacttgattcccttc
cctcgtctccacttcttcatggtcggctttgcgccactcacctcgcgtggctcgcagcag
taccgtgccctcactgtccctgagctgacccagcagatgtgggatgccaagaacatgatg
tgtgctgctgacccgcgccatggccgctacctcacagcctctgccatgttccgtggcaag
atgagcaccaaggaggtggacgagcagatgatcaatgtccagaacaagaactcttcctac
ttcgtggagtggatcccaaacaatgtcaagtccagcgtctgtgacatcccaccgtgtggc
ctctccatggcctccaccttcatcggcaactccacctccatccaggagatgttccgccgt
gtgagcgagcagttcactgctatgttcaggaggaaggctttcttgcattggtacaccggt
gagggcatggatgagatggagttcactgaggctgagagcaacatgaatgacctggtgtcc
gagtaccagcagtaccaggacgccactgcggacgaggagggcgactatgaggacgaggag
gtgatccaggacgagtaa

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