Panicum virgatum (switchgrass): 120681820
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Entry
120681820 CDS
T07260
Name
(RefSeq) isoamylase 3, chloroplastic-like isoform X1
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120681820
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
120681820
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Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
CBM_48
ISOA1-3_C
Isoamylase_C
DUF5696
Motif
Other DBs
NCBI-GeneID:
120681820
NCBI-ProteinID:
XP_039819380
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Position
2K:complement(48915995..48927282)
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AA seq
782 aa
AA seq
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MDSVGTNRSPLRSTAAAAAAAPATRSSALPRPHRHPALGNRLAATKLGIAAWCGGAGGYF
GKVQRFDAARNTMARAQSGKAARSVIREMGHTASDSEMPLKYSWGKAFPLGVSQADGGLN
FAIFSQDASSVTLCLKLPERGTQNDAEIVEFALDRQKNKTGDIWHVSVEGLPASGVLYGY
RINGPQGWQQGHRFDDSVILLDPYAKLVSGRKYFGVDKEEPSQFFGTYDFDSSPFDWGDD
YRLPNLPESDLVIYEMNVRAFTADESSGLVPAVRGSYLGLIDKIPHLLELGVNAVELLPV
FEFDELEFKRFPNPRDHMVNTWGYSTINFFAPMSRYASAGGGPVAASKELKQMVKALHNA
GIEVILDVVYNHTNEADDANPYMTSFRGIDNKVYYMLDLNNNPQLLNFSGCGNTLNCNHP
VVKELVLDSLRHWVKEYHIDGFRFDLASVLCRGPDGSPLDAPPLIKEIAKDSVLSRCKII
AEPWDCGGLYLVGRFPNWDRWAEWNGQYRDDIRRFIKGDPGLKGVFATRVSGSADLYQVN
NRKPYHSVNFIIAHDGFTLCDLVSYNSKHNDVNGECGRDGCNDNYSWNCGVEGETNDLIV
RRLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTHINNFQWGQLEERKD
GHFRFFSEMIKFRHSHPILKRDRFLSKNDVTWHEDCWENQESKFLAFTIHDHNSGGDIYL
AFNAHEYFVDAVIPSPPHHKSWSRVVDTNLESPNDIVPEGVPFTGSGYRIAPYSCILLKA
KP
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggattccgtcggtacgaatcgctccccgctgcgctccaccgccgccgccgccgccgcc
gccccagccactcgaagcagcgcgctgccgcggccgcaccgccaccccgcgctcggcaat
cgcctggcggcgactaagctcgggatcgcggcttggtgtggaggagcgggagggtatttc
ggcaaggttcagagatttgacgccgcacggaacacaatggcgagagcgcagagcgggaag
gcggcgagaagtgtgatcagggaaatgggacacacggcatctgacagtgaaatgcccttg
aaatattcttggggaaaagctttccctctcggagtgtcgcaagctgatggggggctgaat
tttgcgatattctcacaggatgcttcttctgtcaccctttgtttgaaacttcctgagaga
ggcacccaaaatgatgcggaaattgtcgagtttgctttagatcgccaaaagaacaaaaca
ggagatatatggcatgtgtccgtggagggtttgcctgcttctggtgttctttatgggtat
cgcattaatggccctcaagggtggcaacaaggtcataggtttgatgacagcgttattcta
ctggacccttatgcaaaattagtttctggtcgaaaatactttggggttgacaaagaggag
ccaagtcagtttttcggaacttatgacttcgatagctctccttttgactggggtgatgat
tataggcttcctaatttgcctgagtcagatcttgttatatatgaaatgaacgtccgcgct
ttcactgctgatgagtcaagcgggcttgttccagctgttcgcgggagctaccttggtctc
attgacaaaattcctcatttgctggaacttggcgttaatgcagtggaactactccctgtt
tttgagtttgatgaactggaattcaagaggttccctaacccaagggaccacatggtaaat
acatggggatattctacaatcaacttttttgcgcccatgagtcgttatgctagcgctggt
ggtggaccggtggctgcttccaaagagcttaagcagatggtcaaagcattacataatgct
ggaattgaggtcattctggacgttgtttacaaccatacaaatgaagctgacgatgctaac
ccttatatgacttctttccgtggcattgataacaaggtctattacatgttagacctgaac
aacaatcctcagctgctgaacttctcgggttgcgggaatacactaaactgtaaccatcct
gttgtcaaggagcttgtgctcgacagtttgagacattgggttaaggagtatcacatagat
gggtttcggtttgaccttgcaagtgttctttgtcgtggaccagatggcagtcctcttgat
gcacctccactcattaaggaaattgccaaagactctgtattgtctaggtgtaagatcatt
gctgaaccctgggactgtggtggcctttatctagtagggaggttccctaactgggacagg
tgggctgaatggaacggacagtacagagatgatattcgaagatttattaagggagatcct
ggtctgaagggggtatttgccactcgtgtttctggttctgcggatctctaccaggtgaac
aatcggaagccttatcatagcgtaaactttataattgctcatgatgggtttactttatgt
gaccttgtttcatataactctaagcacaatgatgtgaatggagaatgtggtcgtgatgga
tgcaacgacaactatagctggaattgtggcgttgaaggagaaacaaatgatttaattgtg
agacgtcttcgttcgaggcaaatgaagaacttccatgtggcattaatgatctctcagggc
actccaatgatgctgatgggagacgaatatggtcacacacgttatggaaacaataatagc
tatggacatgatactcacataaataattttcagtggggccagttggaagaaagaaaggac
ggccatttcaggtttttctcggagatgatcaagttccgtcatagccatcctatactgaaa
cgagataggtttctcagcaaaaatgatgtcacctggcatgaggattgttgggagaaccag
gaaagcaaatttttggcattcacgatacatgatcacaattctggtggagatatctatttg
gcattcaatgctcatgagtactttgtggatgctgtaattccctcaccaccgcaccataaa
tcttggagccgtgtggtggataccaacctggaatcaccaaatgatattgtcccagaagga
gtgccattcacaggttcagggtatagaattgctccttattcttgcatcctgctcaaggca
aagccttag
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