KEGG   Panicum virgatum (switchgrass): 120681845
Entry
120681845         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120681845
  09124 Replication and repair
   03420 Nucleotide excision repair
    120681845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120681845
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120681845
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120681845
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120681845
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Lep_receptor_Ig DNA_RNApol_7kD zinc_ribbon_4
Other DBs
NCBI-GeneID: 120681845
NCBI-ProteinID: XP_039819415
LinkDB
Position
7N:20954805..20958453
AA seq 114 aa
MSAMKFCRECNNILYPKEDRDRRTLFFACRNCEHQEVSDNNCVYRNEVHHTAGERTQVLQ
DVASDPTLPRTKTVRCTLCGHGEAVFFQATARGEEGMTLFFVCCSPDCGHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtgccatgaagttttgccgcgagtgcaacaacatcctgtaccccaaggaggacagg
gacaggcgcaccctcttctttgcatgtcgcaactgcgagcaccaggaggtctctgacaat
aactgcgtctatcggaacgaggtgcaccacactgctggggagcgaacacaggtcttgcag
gatgttgcttctgacccaactcttcccagaaccaagaccgtccgctgcactctgtgtggg
cacggagaggctgttttcttccaggctacggcaagaggggaggaggggatgaccctgttc
tttgtgtgttgcagccctgattgcggtcaccggtggagggaatga

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