Panicum virgatum (switchgrass): 120683742
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Entry
120683742 CDS
T07260
Name
(RefSeq) farnesyl pyrophosphate synthase-like isoform X1
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120683742
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120683742
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120683742
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120683742
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120683742
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
120683742
NCBI-ProteinID:
XP_039821758
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Position
7N:complement(48370695..48376956)
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AA seq
405 aa
AA seq
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MGALAASIASRVPSGLLSAGLSLAALASPGEIIRRASRLEDKLKELLRVHGDRAGAEQGG
GGQQNKERFLRAYERLKTELLNDRAFDFDFTEETRQWVAKMLDYNVPGGKLNRGLSVIDS
YMLLREGTEVDDEDFYLACVLGWCVEWLQASALVLDDITDNAYTRRDNLCWYKLPTVGLS
AINDGVLLKCHVQAIIKRYFKDKLYFLDLLELWNEIGLQTAMGQMLDLITTHTGAKDLAR
YRIQGYRRIVKYKTSYYSFYLPVACALLLNDAKLSDYIELKNVLIEMGVYFQIQDDYLDC
FGDPEVIGKVGTDIEDYKCSWLIVQAMELANENEMKILYENYGKSDPQCVAAVKNVYKEL
DLQDIFLEYESRVYKHLVSTIDAEADRAIREILKIFLKKIYRRKK
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgggggccctggcggcgtcgatagcgtcgcgcgtgccgtcggggctgctgagcgcgggg
ctgtcgctggcggcgctggcgagccccggcgagatcatccggcgagcgtcgcggctcgag
gacaagctcaaggagctgctccgggtgcacggcgaccgcgcgggggcggagcagggcggc
ggcgggcagcagaacaaggagaggttcctgcgcgcgtatgagcgcctcaagacggagctg
ctcaacgaccgcgccttcgacttcgacttcaccgaggagaccaggcagtgggtcgccaag
atgctagattacaacgtacctggaggtaaactgaaccgcgggctatcggtgatcgacagc
tacatgctgctgagggaagggaccgaggtcgatgacgaggacttctacctcgcctgcgtg
ctgggttggtgcgtcgaatggctccaggcgtctgcacttgtgctcgacgatattacggac
aacgcctacacgaggcgggacaacctctgctggtacaagctgccaacggttggcctgtcg
gctataaacgacggtgttctgctgaaatgccatgtccaggccatcatcaagagatacttc
aaggataagttatatttcctagaccttttggaactctggaacgagataggcctgcagaca
gccatggggcaaatgctcgatctcatcacaactcacactggtgccaaggatcttgcgaga
tacagaattcaagggtaccgtcgcatagtgaagtataagacatcctactattccttctac
ctgccggttgcatgtgcattgctcctgaatgatgcgaaactgagcgattacattgagctg
aaaaacgtactaatcgaaatgggggtatactttcagatacaggatgactacctagactgc
tttggtgaccctgaagtgattggcaaggttggaacagacatagaagactacaagtgttcg
tggctaatagtccaggctatggaattggctaatgagaatgagatgaaaatattatatgag
aactatggcaagtctgatccacaatgtgttgcggcggtgaagaatgtttacaaggagctt
gatcttcaggacatatttttggagtacgaatcaagagtatacaagcacctggtttcgacc
attgacgccgaggcagaccgtgcgattcgggagattctgaagatcttcttgaagaagatt
tacaggaggaagaagtag
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