KEGG   Panicum virgatum (switchgrass): 120684065
Entry
120684065         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120684065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120684065
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120684065
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120684065
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 120684065
NCBI-ProteinID: XP_039822102
LinkDB
Position
7N:47348747..47358108
AA seq 1233 aa
MEEPQKDSGQSPNCSVSEPELMVIDDDGAEKFNNMDEGSNDSPIHVDEGQTSMDVDVKGK
TSLDDESCIDDINGKSSSEPCSNVPIDMSVESLEKFCKEASRSFFDEIGLISHQINSYNE
FVSHGLQELFDSLGEVIVDPGYDPSKKVSGGWKHAIIKFGRVKLEKPVFLSGKDEVDIDL
KPRHARLQNMTYASKIKVEVTIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGRLPV
MVKSDLCLLHSHKESDCLFDAGGYFLVKGMEKVFIAQEQRCLSRLWIVDRPCWTVSFMSE
MKRRRIYIKLVESTKSEDFSGSKIISMSFLYATMPIWLMFFALGISSDKEAFDVIDMQEC
DASVVNTISATIKESDELCEGFRKSDKARQYVDELVKKSRFPPAESFDDYVNKFLFPDIS
GFRNKALFLGYMVKCLLMAFIGKRKCDNKDDFRNKRLDLAGELLGRELRSHIRHAERRMV
KAIQRDLNGDRELQDLERYIDASIVTNGLTRAFSTGSWCHPYKRTERCSGIVATLRRTNP
LQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSR
VVQPLIEGFISCGMSKLNEIPTENIQRMDKIFLNGNWVGSCTDSASFVLRLRCMRRSSLI
DPQVEIKRDKHHKEVRVFSDAGRLLRPLLVVENLNKIRKPKGRQYSFQELMQQEIIEFIG
VEEEEDIQCAWGIRHLFGSEGEISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSE
KHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTIGRKDDFSRPEYF
NGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKKEKID
FGKMESKRGCVDNLDDDGLPYIGASLQTNDIIIGKVTESGEDHSIKLKHTEKGMVQKVLL
SANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTLQGIVPDIVINP
HAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKFGFSKWGAESVIN
GRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME
RDCLLAHGAAANLHERLFMLSDFSQLHICQTCERVANVIMRCVPGGKKIRGPYCGFCKSS
ENIVRINVPYGAKLLYQELFSMGICLKFETEVC
NT seq 3702 nt   +upstreamnt  +downstreamnt
atggaagagccacagaaggacagtgggcaatcaccaaactgctctgtttctgagccagaa
cttatggtaatagatgatgatggagcggagaagttcaataacatggatgagggaagcaat
gattctcctatacatgttgatgaaggacagacctctatggatgtggatgtgaagggaaaa
acatctcttgatgatgaatcctgtattgatgatattaatggaaagtcttcttccgagcca
tgctcaaatgttccaatcgacatgagtgtagaaagcctagagaagttttgcaaagaagca
tcaaggtctttctttgatgaaattggtctgattagccatcagataaattcctacaatgag
tttgtctcgcatgggctccaggagctttttgattcactaggcgaagtaattgttgatcct
ggttatgatccttcaaagaaagtgtcaggtggctggaagcacgccatcatcaagtttggg
agagtgaagcttgaaaagcctgtattcttgtctggcaaagatgaagttgatattgatttg
aaaccgaggcatgcccgcctccagaatatgacatatgcttccaaaattaaagtagaagtg
acgattcaggtttattctttagagaaaagtgacaagtctaaaacagggaatgatggtttt
gttcaaaaaagggactttatgaatgaaactcattggatatttattggccgccttccggtt
atggtgaaatcagatttgtgcttgctgcatagtcacaaggaaagtgactgcctgttcgat
gcaggcggatactttttggttaagggaatggagaaggtattcattgctcaagagcaaaga
tgcctgagcaggctttggattgttgatcgaccttgctggactgtctcttttatgtctgaa
atgaagcgaaggcgcatatatattaaactagtggaatctacaaagagcgaagatttcagt
gggagcaaaatcatttcaatgtcctttctgtatgcgacaatgccaatttggttgatgttt
tttgcactaggaatatcatcagacaaggaagcttttgatgtgatagatatgcaagaatgt
gatgcttctgttgtcaacacaatatctgcaactatcaaagaatctgatgaactgtgtgaa
ggttttcgtaaatcagataaagcacgtcaatatgttgacgagttggtaaaaaaatcaaga
tttcctccagcagagtcctttgatgactatgttaataagtttctctttcctgatattagt
ggatttaggaacaaagcacttttcttaggttacatggtgaaatgcctgctaatggctttt
attggaaagcgcaaatgtgacaataaggatgatttccggaataagaggttggacctggct
ggtgaattgcttggaagggaacttcggtcacatattaggcatgcagagaggcgcatggtt
aaggctattcagagagatttgaatggtgaccgcgagttacaagatcttgaacgttatatt
gatgcatcgattgtcactaatggtctaactcgtgccttttccactggttcttggtgccat
ccctacaaaagaactgaacggtgctcaggaattgttgcgactctaaggagaacaaatcct
cttcaaatgatgtctgatttgaggaaaacccgtcagcgggttgcttatgctgggaaagct
ggtgatgctagatatccgaatccatcctactggggaaagctgtgttttatgtccactcct
gatggtgaaaactgtggacttgtgaaaaatctagctgttactgctattgttagctctagg
gtggtgcagcctttgattgagggcttcatttcttgtggaatgagtaagctgaatgaaatt
cctactgagaacattcaaagaatggataagatctttctgaatggcaactgggtaggatct
tgtactgattcagcttcatttgtattgcgattaaggtgcatgagacgtagcagtctgatc
gatccacaggttgaaatcaaaagggacaagcaccacaaggaagttcgtgtgttttctgac
gcagggcgactcctcagaccccttcttgttgttgaaaatctcaataaaatcagaaaacca
aagggccgccaatactctttccaggaattaatgcaacaagaaataattgagttcattggt
gttgaggaggaggaggatatacaatgtgcctggggaatcagacatttgtttgggagtgaa
ggagagatatctagttatactcactgtgagctggatccttcttttctgctgggactaagt
tgcggtatcattccttttgcaaaccacaattttgctcggagggtactataccaatctgaa
aaacactcacagcaagctattgggtactccacgacaaacccacacatcagagttgatact
ctttctcatcaactatattatcctcagaggcctcttttcaaaacagttatagctgactgt
cttggcagatcagattatactattggaagaaaagatgacttttctagaccagaatatttc
aacggtcaaaatgcgattgttgcagtcaatgttcatcagggatttaaccaagaggattcc
ctggttatgaatagagcttctcttgaacgtggtatgtttcggactgagcacctcaggagc
tataaggcagatgttgaaaacaaagatggaaccaaaagactgaagaaggaaaagatagac
tttggaaaaatggaaagcaaaagagggtgtgtcgacaatcttgatgatgatggcttacct
tacattggtgcaagtcttcagaccaatgacattattattggtaaagttacggaatctgga
gaagaccacagtattaagctgaagcatactgaaaagggaatggttcagaaagtattgctt
tcagcaaatgatgaagggaagaattttgctgttgttactttaagacaggttcgaacaccg
tgccttggagataagttttctagcatgcatgggcagaaaggcgttgttggctttctagaa
tctcaggaaaacttcccatttactctccaaggaatagtccctgatattgtgataaatccg
catgccttcccaacacgtcaaactcctggccaattgcttgaagctgctttggggaaggga
attgccctcggaggtacaatgagatatgctacaccattcaccacagcatcagttgatgtt
atcgcagagcagttgcacaagtttggattttcaaaatggggagccgagagcgttataaat
ggccgaactggtgaaaggatgcagtccttggttttcatgggccctacattttaccaaagg
ctgattcacatgtccgaagataaggtgaaattccgcaacactggaccagtgcaccccctc
acaaggcagcctgtcgctgacaggaaaaggtttggtggagttaagtttggagaaatggag
cgtgattgcctcctcgcccatggagctgctgccaacctgcatgagcggctgttcatgctt
agtgatttctctcagttgcacatctgccagacatgcgagcgggtggctaatgttatcatg
aggtgtgtcccaggagggaaaaagatcagggggccgtactgtggcttctgcaagtcttct
gagaacatagtgaggatcaatgtgccctatggtgcaaagcttctctaccaggaactcttt
agcatggggatctgcctcaagttcgagacagaagtctgctag

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