Panicum virgatum (switchgrass): 120685979
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Entry
120685979 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120685979
09124 Replication and repair
03420 Nucleotide excision repair
120685979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120685979
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120685979
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120685979
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120685979
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120685979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Lhr_WH
TACC_C
Motif
Other DBs
NCBI-GeneID:
120685979
NCBI-ProteinID:
XP_039824062
LinkDB
All DBs
Position
8N:complement(36513359..36522505)
Genome browser
AA seq
1784 aa
AA seq
DB search
MDVRFPYSPAETTKVELVQFGVLSPDEIRQMSVAQIEYAETMEKGKLKSGGLSDPRMGTV
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILVDEDNNK
FKQALKIRNSKNRLRRIYDACKSKKFCGGDDPCIQERQDTGEPVRKRGCCGSMQPNITVD
GMKMIVEFKAPKKNDDKEKPSEPVERKQILSAERVLDILKRISDEDCLLLGLNPKFARPD
WMILQVLPIPPPPVRPSVMMGTSSRSEDDLTHQLAMIIRHNENLRRQERNGTPAHIITEF
AQLLQFHIATYFDNDLPGQPRATQRSGQPIKSICSRLKAKEGRVRGNLMGKRVDFSARTV
ITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHLPPGKTGAKYIIRED
GQRLDLRYVKKSSDLHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR
LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL
GCRKITKRDTLIDKDVFMNILMWWEDFDGKISAPAILKPRPIWTGKQVLNLIIPNKINLI
RFSSWHSEKEKRFITPSDTVVRIEKGELLSGTLCKKTLGTGSGSLIHVIWEDVGPDAACK
FSGHTQWLINYWLLQSGFSIGIGDMIADAATMEQINHTISKAKNDVKELIKQAHDKQLEA
EAGRTMMESFENKVNQVLNRARDNAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMAAC
VGQQNVEGKWIPFGFSGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAIGGREGL
IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEEQKLD
SLQMKKDEFDNSFRYELDDENWKPNYLLPAHVDDLKTIIEFRNVLEAEVQKLEIDRFQLG
TEIATNGANTWPMPVNLKRLIWNAQKTFKIDTRTCSDMHPMEIVEAIDKLQERVKVVHGG
DAISIEAQKNATLFFNIHLRATFASKRVLNEYRLTREAFEWIIDEIVSRFSQSLVAPGEM
IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPE
VNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPTRTIIEEDVEFVQSYYEMPDEDIDP
DKISPWLLRIELDREMMVDKNLSMADIAEKINSEFDDDLSCIFSDDNADKLILRLRITNG
GFNPVKEVMLDTDGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRALLDELRVVI
SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYA
ESDYPNGVTENIMLGQLAPIGTGGCTLFLNDQMLKQSIELQLPSYLECDFSMTPTPPLSG
TPYHEGMMSPSYLMSPDFRASPIDTNASFSRYVRHMALSPFPSQGYSQYSGGYNPSPSSE
DSYNPISPSYTPISPIYTPISQAYSPASLLNAPTSTSYSAASPIYSPTTPIYTPSSPVYS
QIPSYSPTTPIYTPSSPVNSQIPAYSPTTPIYNPVSPSYSPTSSYNPASPNYSPTSPVYS
PTYSPTSPAYSPTAPSYSPASPSYSPTSPLYSPTSPSYSPSSPSYSPASPTYSPTSPGYS
PTAPSYSPTSPNYSPTSPSYNPSSAKYYPSTYSPSNPRMTPDTKIAPDYSPTSPTYSPTS
PTYSLPSPSYNPTSPIDNSGGPSPDYSPTSPNYSPSRSDSTASN
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcggttcccttactcgccggccgagacgaccaaggtggagctcgtgcagttc
ggcgtcctcagccccgacgagatcaggcaaatgtcggtggcacaaatagaatatgcagag
actatggagaaggggaagctgaaatctggtgggcttagtgaccctcggatggggactgtc
gaccgaaaaatcaagtgtgagacatgcatggctgggatggcagagtgcccaggccacttt
ggtcaccttgaactcgccaagccaatgttccacattggcttcatcaagactgtactttcc
atcatgcgctgtgtctgcttcaactgctccaagatcctcgttgatgaggataataacaag
ttcaagcaggctctgaaaatcaggaactcaaagaataggttgaggagaatatatgatgct
tgcaagagcaaaaagttttgtggcggggatgacccttgtattcaggagagacaagatact
ggtgagcctgtaaggaaaagaggctgctgtggttctatgcagccaaatattacagttgac
ggtatgaagatgattgtggagttcaaggcaccaaagaaaaatgatgataaagagaaaccc
tctgagccagtggaaagaaagcagattctctctgctgagagggtacttgatattctcaag
cgcataagtgacgaggactgtcttctattgggcttgaatcccaaatttgcccgtccagat
tggatgatactccaggttcttccaattcctccaccccctgttaggccatctgtcatgatg
ggcacttcttccagaagtgaggatgatttgactcatcaattagctatgataattcggcac
aatgagaacttgagaaggcaagagagaaacggaactccagctcacattataacagagttt
gctcaattgttgcaatttcacattgctacgtactttgataatgaccttcctgggcaaccc
agggctacacaacgttctggacagcctattaaatcaatttgcagcaggttgaaagcaaaa
gaaggccgggttagaggaaatttgatggggaaaagagttgatttctcagcccgcactgtt
atcacaccagatccaaatattaacattgatgaattaggtgtgccatggagtattgctttg
aacctgacatatccagaaactgtcactccatataacattgagaggttaaaagaactcgta
gaatatgggcctcacctacctccagggaagacaggtgcaaagtacattattagggaagat
ggtcagaggcttgatcttcgttatgtgaagaaaagcagcgacctgcatttggagcttggt
tacaaggtggagaggcaccttaatgatggagattttgttcttttcaatcggcaaccaagt
ctacacaaaatgtctatcatggggcatcgtatcaaaattatgccctactcaactttccgg
ttgaacttgtctgtcacttcaccatacaatgctgattttgatggtgatgaaatgaatatg
catgtaccccagtcgtttgagaccagagctgaagttctagagttgatgatggtgccaaaa
tgtattgtgtctccacaatcaaataggcctgtgatgggtattgtccaggacacgctactt
ggatgtcgcaaaatcaccaaaagggacactctcattgataaggatgtatttatgaacatc
ttgatgtggtgggaagactttgatggaaagatctctgctcctgccattctaaaaccaagg
cctatttggactgggaaacaagttttaaacctcattatccccaataaaataaatttgata
cggttttcttcctggcattccgaaaaagaaaaaagattcattactcctagtgacactgtg
gtcaggatagagaagggagagctcctatctggtacactttgcaaaaagactctgggaaca
ggcagtggaagtcttattcatgttatttgggaagatgttggtccagatgctgcatgcaag
ttctcaggtcatacacagtggcttatcaactactggcttcttcaaagtggtttcagtatt
ggaataggagatatgattgcagatgcagccaccatggagcagattaatcatacaatttct
aaagctaagaatgatgtgaaggagcttattaaacaagcacatgataagcaattggaagcg
gaggcaggacgcacaatgatggagtcatttgaaaataaagtaaaccaggttcttaataga
gctcgtgataatgctggaagcagtgctcagaatagcttatctgaaagcaacaatttgaag
gctatggtcactgcaggctcaaagggaagtttcattaacatttcgcaaatggctgcttgt
gttggacagcagaatgttgaggggaagtggatcccatttggtttcagtggtcgaacattg
cctcatttcacaaaagatgactatggtcctgaaagtcgtggatttgtggagaactcttac
cttcggggtttgacacctcaagaatttttctttcatgctataggtggtagggaaggtctg
attgatacggccgtgaagacttctgagactgggtatatccaacgcaggcttgtgaaagct
atggaagacatcatggtgaaatatgatggtaccgtaagaaattccttgggagatgtcatt
cagttcctatatggggaagatggcatggatgctgtttggattgaagaacagaagttagac
tccttgcagatgaaaaaggatgagtttgataattcattccgctatgaactggatgatgag
aactggaagcctaactacctgctgcctgcccatgttgatgatttgaagaccatcattgaa
ttcagaaatgtgttagaggcagaggttcagaagctagaaattgaccggttccagcttggg
actgagattgctacgaatggtgctaatacatggcctatgcctgtcaatctcaagcggctt
atctggaatgcccagaagacattcaagattgacaccagaacatgttcagacatgcacccg
atggaaattgtggaagcaatagataagctgcaagaaagagttaaagttgtgcatggtggt
gatgctataagcattgaggcacagaagaacgcaactttgttctttaatattcatctccgt
gccacatttgctagcaagagggtcctgaacgaatataggcttacaagggaagcatttgaa
tggattattgatgagattgtgtcaaggttttcacagtctttggtggcccctggtgaaatg
attggatgtgtggctgcgcagtccattggggaaccagcaactcaaatgactctaaatacc
ttccattatgctggtgttagtgccaagaatgttactcttggagttcccaggctgagagag
atcattaatgttgccaagaagataaaaacaccatcattgtctgtttatctaaagcctgag
gtgaacaagaagaaagaattggcaaagaatgtccaatgtgcgttggagtacactacactg
cgcagtgtgacccatgctactgagatttggtatgatcctgatcctacgaggaccatcatc
gaagaggatgtggaatttgtccagtcgtattatgaaatgcctgatgaggatattgaccca
gataagatttctccttggctactgcgtattgagcttgatcgtgagatgatggttgataag
aatttgagcatggctgatatcgctgagaagatcaacagcgagtttgatgatgacttatca
tgcatatttagcgatgataatgcagataagcttatcctacgtctgcgcatcacaaatggt
ggtttcaatccagttaaagaggtaatgcttgatacggatggtgtcaatctcttagctgtc
atgtgccatgaggacgttgattccacaagaacaacaagtaaccatttgattgaagtgatt
gaggttcttggaattgaggctgtccgtcgggccctcttggatgaacttcgggtggtcata
tcttttgatggatcctatgtaaactataggcatctggccattctttgcgatacaatgaca
tatagaggtcatctgatggcaattacaaggcatggtatcaatcgcaatgacacaggacct
ctgatgagatgttcttttgaagagactgtggatatcttgcttgatgccgctgtgtatgct
gaatctgactacccgaacggtgtcacggagaacattatgcttggtcagcttgctcctatt
ggtactggaggttgcacactatttctaaatgaccagatgctgaaacagagcattgaactt
caactcccaagctatttggaatgtgactttagcatgacaccaacaccacccctctctgga
acaccatatcatgaaggaatgatgtcgccaagttatctgatgagtccagacttcagggct
tcccccattgatacaaatgcttctttctcgcgatatgtcaggcatatggcgttatcacct
ttcccttcacaaggttactctcaatactctgggggatacaatccaagtcctagctcagaa
gacagttacaaccccatttctccatcatacactcctatatcaccaatttatactcctatt
tctcaagcatacagtcctgcatcactgcttaatgctcctacttcaacatcatatagtgca
gcaagtccaatttactcacccacaactccaatttacaccccatcgagcccagtttactca
cagattccttcatactcacccacaactccaatttacaccccatcgagcccagttaactca
cagattcctgcatactcacccacaactccaatttacaatcctgtatctcctagctatagt
cccacatcaagctataatcctgcttctccaaattacagtcccacttcgccagtttatagt
ccaacatatagccctacatctcctgcatacagccccacagcgccttcatatagcccagca
tcaccatcatatagcccgacatcaccattgtatagccctacatctccatcatacagccct
tcatcgccctcatacagcccagcatcacctacatacagccctacatcgcctggttacagc
ccgaccgcaccaagctacagcccaacatcgccaaactacagcccaacttcaccgagctat
aatccttcatctgccaagtattatccgagcacttactctccaagcaacccaagaatgact
ccagacaccaagattgctccagactacagcccaacttcgccgacatactcaccgacttcg
ccaacatattcactgccaagtccgtcatacaacccaaccagcccaattgacaactctgga
ggacctagtccagattacagtccaacttctccaaattacagccctagtagaagtgactcc
actgcatcgaactag
DBGET
integrated database retrieval system
