Panicum virgatum (switchgrass): 120686522
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Entry
120686522 CDS
T07260
Name
(RefSeq) phytoene synthase 3, chloroplastic-like
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120686522
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120686522
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
120686522
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120686522
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
120686522
NCBI-ProteinID:
XP_039824683
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All DBs
Position
2K:complement(55125595..55128728)
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AA seq
431 aa
AA seq
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MMPTSRTAVASPACAARPRRRGDAPGRAGTARFPTRCGHGRRGRGAAPAPRSASAHAAGP
GAAIGCLEAEPWGAVAPAPALHVAAPAPGDALAVPAEQRVREVVLKQAALAAAAPRRTAR
IEPEPVPGALKAAFGRCGEVCNEYAKTFYLATQLMTPERRRAIWAIYVWCRRTDELVDGP
NASHISALALDRWEARLEDIFAGRPYDMLDAALSDTVASFPVDIQPFRDMIEGMRMDLSK
SRYRTFDELYLYCYYVAGTVGLMSVPVMGVSPDSRAATETVYKGALALGLANQLTNILRD
VGEDARRGRIYLPQDELEMAGLSEADIFNGRVTDEWRSFMRGQITRARSFFRQAEEGATE
LNQESRWPVWASLLLYRQILDEIEANDYDNFTKRAYVPKAKKLMALPKAYLRSLMAPSSL
TQSQRHYSSLT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccaccagccgcacggcggtggcgtcgccggcctgcgctgctcggccgaggcgg
cgcggggacgcgccgggacgcgcgggcacggcgaggttcccgacgaggtgcgggcacgga
aggagaggccgcggcgcggcgccggcgccgcgctccgcctccgcgcacgccgcgggcccc
ggcgccgccattggctgcctggaggccgagccgtggggcgccgtggcgcccgcgccggcg
ctgcacgtggcggcgccggcgcccggggacgcgctcgccgtgccggccgagcagagggtg
cgcgaggtcgtgctgaagcaggcggcgctcgcggccgcggcgccgaggaggacggcgcgg
atcgagccggagcccgtgcccggcgcgctcaaggcggccttcggccgctgcggggaggtc
tgcaacgagtacgccaagacattctacctggcgacgcagctgatgacgccggagaggagg
agggcgatctgggcgatctacgtgtggtgcaggaggacggacgagctcgtggacgggccc
aacgcgtcgcacatctcggccctggcgctggaccggtgggaggcgcggctggaggacatc
ttcgcggggcgcccctacgacatgctcgacgccgcgctctccgacaccgtcgccagcttc
cccgtggacatccagccgttcagggacatgatcgaggggatgcgcatggacctgagcaag
tcccggtatcggaccttcgacgagctctacctctactgctactacgtcgccggcaccgtg
gggctcatgagcgtcccggtgatgggcgtctctccggactccagggcggccaccgagacg
gtctacaagggggcgttggccctgggcctcgccaaccagctcaccaacatcctcagggac
gtcggcgaggatgcgaggagaggaaggatctatctcccgcaggacgagctggagatggcg
gggctctccgaagccgacatcttcaacggccgcgtcaccgatgagtggaggagcttcatg
aggggccagatcacgcgggcgaggtcgttcttcaggcaggcagaggaaggcgccaccgag
ctcaatcaggagagccgatggccggtgtgggcctctctgcttctgtaccggcagatcctg
gacgagatcgaggcgaacgactacgacaacttcaccaagagggcctacgtccccaaggcc
aagaagctgatggcgctgcccaaggcttacctgagatcactgatggccccctcttctctg
acccagagccagagacactactccagcctaacatag
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