Panicum virgatum (switchgrass): 120686579
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Entry
120686579 CDS
T07260
Name
(RefSeq) ABC transporter D family member 1-like isoform X1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120686579
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120686579
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120686579
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
120686579
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
120686579
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
AAA_29
AAA_23
AAA_16
SMC_N
nSTAND1
AAA_7
ABC_membrane
Motif
Other DBs
NCBI-GeneID:
120686579
NCBI-ProteinID:
XP_039824727
LinkDB
All DBs
Position
2K:55178553..55191032
Genome browser
AA seq
1321 aa
AA seq
DB search
MASLQLLQLTERGRNLLSSRRRTLAVVSGALIAGGTLAYTQSGRWKRQQKENSCTNGNAH
TKHRIGHDGTEGKLVKTRKKKSGLKSLHFLAAILLKKIGPNGSNYLLGLIITAVLRTAVG
HRLAKVQGYLFRAAFLRRVPTFTRLIIENLLLCFLQSTIYQTSKYLTGSLGLRFKKILTD
LVHADYFENMVYYKISHVDHRISNPEQRIASDIPKFCSELSDLVQDDLAAIAEGLIYIWR
LCSYASPKYVLWILAYVIGAGGTIRKFSPAFGKLKSTEQQLEGEYRQVHSRLRTHAESVA
FYGGESREASHIMQRFGALVKHLNVVLHENWWFGMIQDFLLKYLGATVGVILIIEPFFAG
NLRPESSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNILSGYANRIHELLDVSR
ELSGVRDRLLSQNSSVGNYISEANYIEFSGVKVVTPSGNVLVDDLTLRLESGSNLLITGP
NGSGKSSLFRVLGGLWPLVSGHIVKPGVGSNLNKEIFYVPQRPYTAVGTLRDQLIYPLTA
DQETEPLSYSGMVDLLKNVDLEYLLERYPLDKEVNWGDELSLGEQQRLGMARLFYHKPKF
AILDECTSAVTIDMEERFCKRVRAMGTSCITISHRPALVAFHEIVLSLDGEGGWNVQDNR
NGSSFSPVVEFDVLKSSETDRKSDARTVQRAFVTNTKGNASSKLKQSYSTEVITSSPSME
IEHTVQAPIVTQLQCSPRPLPARVAAMSQILVPKLFDKQGGQLLAVALLVFSRTWISDRI
ASLNGTSVKYVLEQDKAAFIRLTGISVLQSAANSIVSPSLRNLTSRIALGWRIRMTNHLL
QYYLKRNAFYKVFNISGMNVDADQRLTHDVEKWTNDLAGLVTGMVKPLVDILWFTWRMKI
LSGRRGVAILYAYMFLGLGFLRAVSPDFGDLANQEQELEGTFRFMHSRLRTHAESIAFFG
GGSREKAMIEAKFSTWLNHSKVLLRKKWLYGIFDDFVTKQLPHNVTWGLSLLYALEHKGD
RALTSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRIFELEELLQAAQS
NPAVPSNAINVASEEIISFHNVDIVTPSQKLLAIQLSCDVSQGKSLLVTGPNGSGKSSIF
RVLRGLWPIASGRLTKPSEGIFNVPQRPYTCLGTLRDQIIYPLSREEAELKMISHERSDK
STASKMLDDHLKTILENVRLVYLLEREGWDATPNWEDILSLGEQQRLGMARLFFHCPKYG
ILDECTNATSVDVEEHLYRIATNIGITVITSSQRPALIPFHSLELKLIDGEGKWELCAIH
Q
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcttcaattgttgcaactgacagagcgcgggcgcaaccttttgtcttcaaga
aggagaacacttgcagttgtttctggagcactaattgcaggtggaactttagcatatacc
cagtcaggccgatggaaaaggcaacagaaagaaaattcttgcaccaatggaaatgctcat
accaaacacagaattggtcatgatggtactgaaggtaaattggttaaaacaaggaaaaag
aaaagtggactcaagtccttacattttctagctgccatcttacttaagaagattggccca
aatggatcaaattaccttcttggcttgattataacagcagtcttgcgtacagctgtaggc
cacagattagcaaaagtacaagggtatttgttcagagctgctttccttcggcgtgttcca
accttcacacgtctgattattgaaaaccttcttctatgctttctccaatccacaatatac
cagacgtcaaagtacttgacagggtccttaggcttgcgcttcaagaaaattttgacagat
cttgtccatgctgattattttgagaacatggtatactacaagatctcacatgttgatcat
aggatctcaaacccagagcaaagaattgcaagtgacataccaaagttctgctcagaacta
agtgaccttgtacaagatgatctggctgcaattgcagaaggattaatatatatctggcgt
ctctgctcttatgcaagtccgaaatatgtattgtggattctggcatatgttataggtgct
ggtggtacgattagaaaattttctcctgcttttggtaagttgaagtctacggaacaacag
ctagagggggaatatcgccaggtccattcacgattgagaacccacgctgagagtgtggca
ttttatggtggtgaaagcagagaagcatcacatattatgcagcggttcggggcacttgtt
aagcacttgaatgttgttcttcatgaaaactggtggtttggcatgattcaagattttctt
ctgaagtatcttggtgccaccgtgggagttatcctaattattgaacctttctttgcgggg
aatcttagacccgaatcatccaccttaggacgggcagagatgttgagcaatctccgatat
cacaccagtgtgataatatcattatttcagtctcttgggaccctttctatcagttcaagg
cgcttaaatattctcagtggctatgctaatcgtattcatgaattactggatgtctcacgt
gagctatctggtgttcgtgatagattgttgagtcaaaattcatctgttggaaattatatc
agcgaggcaaattatatagagttctcaggtgttaaggtggtgacaccctctgggaacgtc
ttggttgatgatttgacgctccggttggagtcaggctctaatctattgatcactggcccc
aatggtagtggaaaaagctctctattccgtgttcttggtggtctgtggccgctggtatct
ggtcatatagtcaaacccggtgttggttctaatctcaacaaggaaatattctatgtgccc
cagagaccatatacagctgttggaacacttcgtgaccagttaatctatccactcaccgca
gaccaggaaactgaaccactcagctatagtggcatggtggatctactaaagaatgttgat
ctagagtacttgctagaacgctacccccttgataaggaagttaactggggtgatgaattg
tctcttggcgagcagcaaagattaggaatggctagactgttctatcacaagcccaagttt
gctatcctggacgaatgcactagtgctgtgacaatagatatggaagaacgcttctgcaaa
cgggttcgagcaatgggcacatcatgcataacaatatctcaccgtccagcattagttgca
tttcatgaaatcgttttgtccttggatggtgaaggagggtggaatgttcaagacaacaga
aatggttcttccttctctcctgtagtagaatttgatgtgttgaagtcatcagaaactgac
cgcaaatctgatgcccgtactgttcaaagagcttttgtcacgaacacaaagggcaatgca
tcatcaaagctcaagcagtcctattcaacagaggtcataacatcttcccctagtatggag
atagaacatacagtacaagcacctatcgtcacacaattgcaatgctctccaagacctttg
cctgccagagttgctgcaatgtctcaaatactggttccaaagctgtttgataaacaagga
gggcagcttcttgcagtggcactacttgtattttcccgcacttggatttcagaccgtata
gcttcactgaatggaacaagtgtcaagtatgtcttggagcaggacaaagctgccttcatt
cgtttgactggaatcagtgtgctgcaaagtgctgcaaattctattgtatcaccctcacta
agaaatcttacttcaagaattgcccttggatggaggattcgcatgaccaaccatctactt
caatattatttgaaaagaaatgctttttacaaggtattcaacatttcgggcatgaatgtt
gatgcagaccaaagattaacacatgatgtagagaagtggaccaatgatcttgctggcttg
gttactggaatggtgaagccactagttgacattctttggtttacatggagaatgaagata
ttgtctgggcgaagaggagttgctatactgtatgcttacatgttcctaggtcttggtttt
ctaagagctgtgtcccctgacttcggtgatcttgcaaaccaagaacaagaacttgaaggc
acattcagattcatgcactcaagactgcggacacatgctgagtcaatagctttctttggt
ggtggatcaagggaaaaagctatgattgaagctaaattctcaacatggctcaaccactcg
aaggttctattgaggaaaaagtggctttatggtatttttgatgattttgtgacgaaacaa
ttacctcataatgtgacgtggggactgagtttgttatatgctttggagcacaagggagac
cgagctttgacttcaacacaaggagagctggcacatgccctgcggttcttggcatctgtg
gtgtcacaaagcttcatagcatttggtgatatccttgaattacacaagaagttccttgaa
ctttctggtggtattaatagaatatttgagcttgaggagcttcttcaggcagcacaaagc
aatcccgctgtgccttctaatgctataaatgtcgcctctgaagaaatcatctccttccat
aacgtggatattgtcacgccgtcacagaagctattggctatccaattatcttgtgatgta
tctcaagggaaaagccttcttgtgactggtccaaatggtagtggaaagagttctattttt
agggtgctccgaggtttgtggcccattgcttctggtagacttaccaagccatctgaagga
attttcaatgtacctcagcgtccatatacttgtcttggaaccttgagggatcagatcata
taccccctctcgcgtgaggaggcagagttgaagatgatttcacatgaaagaagtgacaag
tctacggcttccaagatgttggatgatcacttgaagacgattctagagaatgtccgtttg
gtgtatcttctagaaagggaaggttgggatgctactcctaactgggaagatatcctgtcc
ttgggagaacagcagaggctggggatggctcgtttattctttcactgtcctaaatatggc
atccttgacgagtgcaccaatgccacaagtgtggatgtcgaggagcatttgtacaggata
gcaaccaacattggcataacagtcatcacgtcctcgcaaaggcctgctctgattcccttc
cattcgttggaactgaaactcatcgatggagaagggaagtgggagctatgtgccatccac
caataa
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