Panicum virgatum (switchgrass): 120687425
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Entry
120687425 CDS
T07260
Name
(RefSeq) pseudouridine-5'-phosphate glycosidase-like
KO
K16329
pseudouridylate synthase [EC:
4.2.1.70
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00240
Pyrimidine metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
120687425
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.70 pseudouridylate synthase
120687425
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Gene cluster
GFIT
Motif
Pfam:
Indigoidine_A
PTCB-BRCT
DUF5607
Motif
Other DBs
NCBI-GeneID:
120687425
NCBI-ProteinID:
XP_039825358
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Position
9N:complement(416796..421877)
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AA seq
285 aa
AA seq
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MPYPKNLQTAVEVEAVVRDTGAIPATIAILDGVPHVGLSSEQLKRLATNGSQFHKTARRD
IAHVVASGGNGATTVSATMFFAHKVGIPIFVTGGIGGVHRHGEQTMDISSDLTELGKTPV
AVISAGVKSILDIPRTLEYLETQGVTVAAYRTNEFPAFFTEISGCQVPCRVDSPEECAKI
IHANKNLDLGSGILIAVPIPTQDAASGNIIESAIQKALEDAEEKKIIGNAITPFMLERVK
ELTGGSSLEANIALVKNNARLGAEVAVALSNLQHKEKNRMRRSAL
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccgtaccccaagaatctccagaccgccgtggaggtggaggccgtcgtcagggacact
ggggctatccctgccaccatagccatcctagatggagtcccacatgttggcctcagcagt
gaacaattaaagagactggctactaatggaagtcaatttcacaagactgctagaagggat
attgcacatgtcgttgcatctggtggcaatggtgcaacaacagtttctgccactatgttc
tttgctcacaaggttggcataccaatttttgtaactgggggaataggaggcgtgcataga
catggcgaacaaactatggacatctcctcagacttaactgaacttggaaagactcctgtg
gctgttatatcagcaggcgtgaagtccattttggacataccaaggacacttgaatacctg
gaaactcaaggggtcactgttgctgcttacagaaccaatgaatttcctgctttcttcaca
gagattagtggatgccaggtaccatgtcgcgttgattctccagaagaatgtgccaaaata
atacatgcaaacaagaaccttgatctaggttctgggatccttatcgcagtgccaattccc
acacaggatgcagcttcagggaacattatagagtctgcaatacagaaagctctagaggac
gcagaggaaaaaaagataataggaaatgcgattactccgttcatgcttgaaagagtaaaa
gaactaactggaggatcttccttggaagccaatattgcacttgttaagaacaatgctcgt
cttggtgcagaagttgctgttgccctttctaatcttcagcacaaagaaaaaaacagaatg
aggagatcggcattgtag
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