Panicum virgatum (switchgrass): 120691541
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Entry
120691541 CDS
T07260
Name
(RefSeq) sphingosine kinase 1-like isoform X1
KO
K04718
sphingosine kinase [EC:
2.7.1.91
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
pvir04148
Efferocytosis
Module
pvir_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120691541
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120691541
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.91 sphingosine kinase
120691541
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Motif
Pfam:
DAGK_cat
YegS_C
CERK_C
Motif
Other DBs
NCBI-GeneID:
120691541
NCBI-ProteinID:
XP_039830565
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Position
2K:60541586..60545738
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AA seq
517 aa
AA seq
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MADPQTQAEALAGPARINGAAAEATLSGGELTWRPAGGGEGQERRLELDSEVLGCRVEGR
KLRVATFSAGGGGGGERPSALACGGGGKGGGGDGSRRRGEVVMEMESDDAAERWGDAIRD
RLASLAITPSGRPKRLFIIVNPYGGKRSGRSIFQNDVLPLIEAAGISYTMQETKHRLHAQ
EIAHSLDLRKYDGIVSVSGDGVLVEVVNGFLQREDWETAIKMPLGIIPAGTGNGMAQSLL
HAAGEPFSISNAVFAIIRGHRRALDVTSVVQGKTRFFSVLMLTWGLVADVDIESEKYRWM
GSSRLEFYILLRVINLRRYNGRVLFVPAPGYEEVGEPVEQITSFEQNGVSTGTQEDKAND
RNGETIGYPGPSIEEADLKWRSLSGPFVSVWLGNVPFASEDAMAAPKAEFSDGYLDAAII
RDCTRWDVLGLMFQTKDGAYVNSPYVEYFKVKAIRIEPGLRVGGGRGARGGIIDSDGEVI
ARGDGSRGEAEHLMAYGPPIQLTVDQGLATIFSPRSR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggccgatccccagacccaggccgaggccctggcggggcccgcgcggatcaacggcgcc
gcggcggaggccacgctctcaggcggcgagctgacctggcgccccgccggcggcggggag
gggcaggagcggcggctggagctggattcggaggtgctcgggtgccgggtcgaggggagg
aagctcagggtcgcgaccttttccgcgggcggcggcggaggcggggagcggccctcggcg
ctggcctgcggcggcgggggcaaagggggaggaggggacgggagccggaggagaggggag
gtggtgatggagatggaaagcgacgacgccgcggagaggtggggggacgccatcagggat
cgcctcgcctcgctcgctattactccttcaggccggccaaagagactgttcattatagtg
aacccttatggtggaaagagaagcggtcggagtattttccagaacgatgtcctaccactc
attgaagctgctggcatttcttatacaatgcaagaaaccaagcatcgccttcatgctcaa
gagattgcgcattcactggatcttagaaaatatgacgggattgtttctgtcagtggagat
ggtgtcctggtggaggttgttaatggtttcctgcaaagggaggactgggaaacagcaata
aaaatgccacttgggattatcccggcaggtactggaaatggaatggcacaatctttattg
catgccgctggtgaaccgttctccatatcaaatgccgtatttgcaataatcaggggtcac
agacgcgcacttgatgttacttctgttgtgcagggaaagacaaggttctttagcgttctg
atgcttacatggggtctggtagctgatgttgatattgaatcagagaagtacagatggatg
ggaagctctcgccttgaattttatatccttctccgcgtgatcaacctgcgacggtacaac
gggcgtgtcctttttgttccagcccccggatacgaagaagttggtgagcccgtggagcaa
attaccagttttgaacagaatggggttagcactggtacccaagaagacaaagcaaatgac
agaaatggcgaaacgattggttacccaggcccctcaatcgaagaagctgatctcaaatgg
agatcgctgagcggtccattcgtttcggtttggctcggaaacgtccctttcgctagtgaa
gatgccatggcagcacccaaagcagagttctccgatgggtacctggatgcagctataatc
agggactgcacgcggtgggacgtgcttgggctcatgttccagacgaaggacggcgcgtac
gtgaactcgccgtacgtggagtacttcaaggtgaaggctatacggatcgagccgggcctg
cgcgtgggtggcggccgcggcgccaggggcggcatcatcgactcggacggggaggtgatc
gcgcggggcgacgggtcccgcggcgaggcggagcacctgatggcgtacggcccgcccatc
cagctgacggtggaccaggggctggccaccatcttctccccgagatcgagatga
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