Panicum virgatum (switchgrass): 120697164
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Entry
120697164 CDS
T07260
Name
(RefSeq) ABC transporter D family member 1-like isoform X1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
pvir04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120697164
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120697164
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120697164
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
120697164
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
120697164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
AAA_29
AAA_23
AAA_16
SMC_N
nSTAND1
Motif
Other DBs
NCBI-GeneID:
120697164
NCBI-ProteinID:
XP_039836235
LinkDB
All DBs
Position
3K:6876579..6891766
Genome browser
AA seq
1325 aa
AA seq
DB search
MPSLQLLQLTDRGRGLLSSRRRTLAVVSGALIAGGALAYARSSQSQLKRRSGAGEASALA
TNGDGLSQSGRLAVTRQKKSGLKSLHFLTAILLKKIGPNGMRYLLGLILTAVLRTAVGHR
LARVQGFLFKAAFLRRVPTFTRLIVENLILCFLQSTLYQTSKYLTGSLSLRFKKILTDIT
HADYFENMVYYKMSHVDHRISNPEQRIASDIPKFSSELSELVQDDLAAVAEGLIYTWRLC
SYASPKYVFWIMAYVLVAGGVIRKFSPSFGKLKSTEQQLEGDYRQLHSRLRTHAESVAFY
GGENREASHIMQKFEALVGHLNLVRHENWWFGMIQDFFLKYFGATVAVVLIIEPFFSGNL
RPDSSTLGRADMLSNLRYHTSVIISLFQSLGILSISSRRLNILSGYADRIRELLDVSREL
SGVRDKSLTYNSSPGNYTSEANHIEFSDVKVVTPAGNILVDDLTLRVETGSNLLITGPNG
SGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLREQLIYPLTEDQ
EIEPLTFDGMVDLLKNVDLEYLLERYPLDKEVNWGDELSLGEQQRLGMARLFYHKPKFAI
LDECTSAVTTDMEERFCKKVRAMGTSCITISHRPALVAFHDIVLSLDGEGGWSVQHRRDD
SSFSTEESDFSLSETDRKSDALTVQRAFMSRAKSNASLGSKDHSYSTEVIASSPKVEIEN
AVKTSRLPHLRCHPRPLPPRVAAMLKILVPKLLDKQGGQLLAVAVLVFSRTWISDRIASL
NGTTVKFVLEQDKAAFIRLIGVSILQSAANSFVAPSLRTLTAKLALGWRIRMTNHLLRYY
LKRNAFYKVFNMSGKSIDADQRLTLDVDKLTTDLAGLVTGMVKPLVDILWFTWRMKLLSG
RRGVAILYAYMLLGLGFLRAVSPDFGHLSGQEQELEGTFRFMHSRLRTHAESIAFFGGGL
REKAMVEDKFVKLLNHSKILLRKQWLYGIVDDFVTKQLPHNVTWGISLLYALEHKGDRAL
TSTQGELAHALRFLASVVSQSFIAFGDILELHKKFLELSGGINRIFELEELTRAAQRNTM
VPSNAINAASEGIISFHEVDIVTPSQKLLASKLSCNVVQGKGLLLTGPNGSGKSSIFRVL
RDLWPTFSGKVIKPSEGMFHVPQRPYTSLGTLRDQIIYPLSREEAEMKVLLLQQASNCDD
IGNNSSASVLLDDHLKTILENVRLVYLLEREGWDSTPNWEDVLSLGEQQRLGMARLFFHH
PKFGILDECTNATSVDVEEHLYRLATNMGITVITSSQRPALIPFHALELKLIDGEGNWEL
CSIRQ
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctgcagctgctgcagctgacggaccgcggacgggggcttctgtcttccagg
aggaggactctcgcggttgtttctggtgcgctgattgctggtggagctttggcctatgcc
cggtcaagccagagccagctgaagaggcgttcaggagcgggtgaagccagtgcattggcc
accaatggggatggattgagtcaaagtggtagattggctgtaacaaggcagaaaaagagt
gggctcaaatctttgcatttcttaactgctatcctgctcaagaagattggtcccaatggc
atgcgctaccttctaggcttgatattaacagcggtgctacgtactgctgttgggcataga
ttagcaagagttcaaggctttttgtttaaagcagcatttcttcggcgtgtcccaacattt
acacgcttgattgtagaaaaccttatattatgtttcctccaatctacattatatcagaca
tcaaaatacttaacagggtctttaagtttgcgtttcaagaaaattttaacagatatcacc
catgctgattactttgagaatatggtttactacaaaatgtcacatgtggatcatcgaata
tcaaacccggagcaaaggattgctagtgatatcccaaagttctcttctgaactaagtgag
cttgtacaggatgatctggctgcggttgcagaagggctaatatatacctggcgtctctgt
tcgtatgccagtccaaaatatgtgttctggattatggcatatgtactagttgctggtggg
gtaatcaggaaattctctccttcttttggaaagctgaaatccacggaacaacaacttgaa
ggagactatcgccaacttcattcgcgattaagaacacatgctgagagtgtagcattttat
ggtggtgagaatagagaagcatctcatatcatgcagaagtttgaggctcttgttgggcat
ctgaatcttgtgcgtcatgaaaactggtggttcggcatgattcaagatttctttctgaag
tattttggtgccactgtggcagttgtccttattattgaaccattcttctctggcaacctt
agacctgattcatctacccttggaagggctgacatgttgagcaatcttcgatatcacaca
agtgtgatcatatcactgtttcagtcccttgggatcctttctatcagctccagacgttta
aatatcctgagtggctatgcagaccggattcgtgagttattggatgtttcacgtgagcta
tctggggttcgtgataaatctttaacttacaattcttctcctggaaattataccagcgaa
gcaaaccatatagaattttctgatgttaaggtagtcacacctgcaggtaatatcttggtt
gatgatttgactctccgggtagaaactggttcgaatcttttgataactggtcccaatggt
agcggaaaaagctctcttttccgggtccttgggggtctgtggccactggtatctggccac
attgttaaacctggtgttggttcagatctaaataaggagatcttttatgtccctcaaaga
ccatacacggctgttggaacactacgtgaacaactaatctatcctcttacagaagatcag
gagattgaaccacttacctttgatggcatggtggacctgctaaagaatgttgacctggaa
tacttgcttgaacgctatcctcttgataaggaagttaactggggtgacgagttgtccctt
ggtgagcaacaaagattgggaatggccaggttattctaccataagccaaaatttgccatc
cttgatgagtgcactagtgccgtgacaactgatatggaagaacgtttttgcaaaaaggtt
cgggctatgggcacgtcctgcataacaatatctcatcgcccagctttagttgcatttcat
gatattgttttgtccttggatggtgaaggcggttggagtgttcagcatagaagggatgac
tcatccttttccactgaagagtctgatttttcactatcagaaactgatcgtaagtctgat
gcactgactgttcaaagggcttttatgagcagggcaaagagcaatgcttcattggggtcc
aaggaccattcttactctacagaggtcatagcatcttcccctaaggtggaaatagaaaat
gctgtaaagacatctcgccttccacatctacgatgccacccaagacctttgcctcccaga
gtagctgcaatgctcaaaatactggttcctaaactacttgataaacaaggcggacagttg
cttgctgttgctgtacttgttttctctcgtacatggatctctgatcgtattgcttcattg
aatgggacaactgtgaagtttgtcttggagcaggataaagctgcctttattcgtctgatt
ggtgtcagtattctacaaagtgctgcaaattcttttgtggcaccgtctcttaggaccctt
accgcaaaacttgcccttggatggcggattcgcatgaccaatcatttgcttcgatattat
ttgaaaagaaatgcattctacaaggtattcaacatgtcaggtaaaagtattgatgcagac
caaagattaacacttgatgtagacaagttgaccactgatcttgctggcttagttactgga
atggtaaaaccactagttgacattctttggtttacatggagaatgaagctcttgtctgga
cgaagaggagttgccatactatatgcttacatgttactgggtttgggctttctgagagct
gtatcccctgattttggtcatctctcaggtcaagaacaagaacttgaaggaacattcagg
ttcatgcactcgagactgcggacacatgctgaatcaattgctttctttggtggtggttta
agagaaaaagctatggttgaggataaattcgtgaagttacttaaccactcaaagattctc
ttgaggaaacagtggctttatggtattgttgatgattttgttacaaagcaacttcctcac
aatgtgacatggggtattagtctattatatgctttggagcacaagggagacagagctttg
acctcaactcaaggagagctagcacatgctctacggttcttggcttcagtggtgtcacag
agcttcatagccttcggcgacattcttgagttacataaaaagttccttgaactctctggt
gggattaaccgaatctttgagcttgaggagcttacacgtgccgctcaaaggaataccatg
gtgccttccaatgccattaatgcagcctcagaaggtattatttcattccatgaagtggac
attgtaacgccatcacagaagctattggctagcaaactgtcatgcaatgtggtacaaggg
aaaggccttcttctgactggtcctaatggtagtggaaagagttctatttttagagtgctg
agagatttgtggcccaccttctctgggaaagttatcaagccctctgaagggatgtttcat
gtccctcagcgtccatataccagcctgggtactctgcgggatcagatcatataccctctc
tcaagggaggaggcggagatgaaagttctcttgttacagcaagctagcaactgtgatgat
ataggaaacaattctagtgcttctgtcttgcttgatgatcacctgaagacaattctagag
aatgtgcgtcttgtgtatcttctagaaagagaagggtgggattctacaccaaattgggaa
gatgttctgtcgttaggagaacaacagaggcttgggatggcccgtttgtttttccatcat
cctaagtttggtatcctcgacgagtgcaccaatgctactagtgttgatgttgaagagcat
ctgtacaggcttgcaactaacatgggcataaccgtgatcacttcctcacaaaggcctgct
ctgatacccttccatgccttggagctgaagctcattgatggcgaagggaactgggagcta
tgttcgatccggcagtga
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