Panicum virgatum (switchgrass): 120697614
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Entry
120697614 CDS
T07260
Name
(RefSeq) glutamine--tRNA ligase-like
KO
K01886
glutaminyl-tRNA synthetase [EC:
6.1.1.18
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120697614
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120697614
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120697614
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.18 glutamine---tRNA ligase
120697614
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (A)
120697614
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120697614
Prokaryotic type
Other AARSs
120697614
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1c
tRNA_synt_1c_R1
tRNA-synt_1c_C
tRNA-synt_1c_C2
tRNA_synt_1c_R2
Motif
Other DBs
NCBI-GeneID:
120697614
NCBI-ProteinID:
XP_039836823
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All DBs
Position
3K:complement(11896858..11902901)
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AA seq
794 aa
AA seq
DB search
MATASDGDKGAAAPPQLESFLAIGLDQRTAENALANRKVTANLTAVIAEAGVTGCDKSVG
NLLYTVATKYPANALVHRPNLIKYILSEKIKNSAQLDAALSFLSTLGPDSLDPVKFEEAC
GVGVVVSFEEIQLAVSDVLNENMEAIVEQRYRINVGSLCGQVRKRHPWGDAKLVKEEIEK
RLMEILGPKTEADNAKPMKKKKEKPTKVEEEKTVAAPPSEEELNPYSIFPQPEENFKVHT
EIFFSDGNIWRAHNTKSILEKHLKVTGGKVMTRFPPEPNGYLHIGHAKAMFIDFGLAKER
NGHCYLRFDDTNPEAEKKEYIDHIQEIVTWMGWEPYKVTYTSDYFQDLYELAICLIQKGL
AYVDHQTPEEIKEYREKKMNSPWRDRPIEESLRLFEDMRRGLIAEGKATLRMKQDMQNDN
KNMADLIAYRIKFTPHPHAGDKWFIYPSYDYAHCLVDSLENITHSLCTLEFDIRRPSYYW
LLVALGQYQPHVWEYSRLNISNNVMSKRKLNRLDTDKWVDGWDDPRLLTLAGLRRRGVSS
TAINSFIRGMGITRSDNSLIRVERLEYHIREELNKVAPRALVVLHPLKVVITNLDHGTII
NLDAKMWPNASDDDASAHYKVPFSRTVYIEQSDFRLKDSKDFYGLAPGKSVMLRHAFPIK
CTEVIYGDNPDSIVEIRAEYDPSKATKLKGVLHWVAEPSPGVEPLKVEVRLFEKLFLSEN
PAELEDWLGDLDPQSKEVIKGAYAVPSLANAVLGDKFQFERLGYFAVDSDSTPERLVFNR
TVTLKDSYGKAGPK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgccagcgacggagacaagggggcggcagcgccgccgcagcttgagtcgttt
ctggccatcgggttggaccagcgcacggcggagaacgccctcgccaatcgcaaggtcaca
gccaacctcaccgccgtcatcgccgaggctggtgttactgggtgcgacaaatctgtgggg
aatctcctctacactgttgcgacgaagtacccggcaaatgcactagtgcaccgccccaat
ctcattaagtacattctgtcagaaaagatcaagaactctgcgcaattggatgctgcactg
tcgtttctttctaccttgggtcctgattccttggatccggtgaagtttgaagaggcttgt
ggtgtgggggtagttgtttcatttgaagagattcagttggcagtctctgatgttctaaat
gaaaatatggaagccatagtggaacagcgatatcgtataaatgttggtagcttatgtgga
caagttaggaagaggcacccctggggtgatgctaagttggtcaaggaggaaattgagaaa
aggcttatggagattttaggtccaaagacagaagcagataatgctaagccaatgaaaaag
aaaaaggagaagcctaccaaagttgaggaggaaaaaactgttgctgctccaccttctgag
gaggaactaaatccctactccatatttcctcaaccagaagaaaacttcaaggtccataca
gaaatatttttcagtgatggaaatatatggagagcacacaacacaaagagtattttagag
aaacatcttaaagtaactggaggaaaagtgatgacccgctttcccccagagcctaatgga
taccttcatattggtcatgccaaggctatgttcattgattttggactggctaaagagcgc
aatggccactgttaccttaggtttgatgatacaaatccagaggccgagaagaaagaatac
atagaccatattcaagaaattgtcacatggatgggctgggaaccttacaaagttacatat
acaagtgactatttccaagatttatatgaacttgctatttgtttgatacagaagggacta
gcctatgttgatcaccagaccccagaagaaattaaggagtacagagaaaagaagatgaat
agtccgtggagagataggcccattgaagagtcactgaggttatttgaagatatgagacgt
gggttgattgctgagggaaaggctactcttcggatgaagcaggacatgcagaatgacaac
aagaacatggctgatttaatagcatatagaataaagtttacacctcatccacatgctgga
gacaagtggttcatctacccaagctatgactatgctcattgtttggtagattctcttgag
aacattacacactcgttgtgtactctagaatttgacatacgtcgtccgtcatactactgg
ctgcttgtagccttgggccagtaccagccacatgtctgggaatattcaaggctaaacata
tcaaacaatgttatgtccaaaagaaagctgaatcgacttgacacagacaaatgggttgat
gggtgggatgatcctcgactgttgacactagcagggctaagaaggagaggagtatcatca
acagcaattaactctttcattcgtggaatgggaataacaagaagtgacaatagcttaatt
cgcgttgaacgccttgaataccatattagagaagagcttaacaaagtagcccctcgagct
ttggtcgttttgcatcctctaaaggttgttataactaatttagatcatggaacaataatt
aaccttgatgccaaaatgtggcctaatgcctccgatgatgatgcttcagcccactacaag
gttccattctcaagaactgtctacattgagcaatctgatttccgcctaaaggattcgaaa
gatttctatgggcttgctcctggtaaatcagtgatgctgagacatgcattcccgataaaa
tgtacggaggttatctatggagacaatccggatagcattgttgaaatccgagctgagtat
gacccttctaaggctacaaaactgaagggcgtattacactgggttgcggagccttctcct
ggggttgagccactcaaggttgaagtcagattgtttgagaaactgtttctttcagagaac
cctgcggagctggaggattggctgggtgatctcgacccacagtcaaaagaggtgataaag
ggtgcatatgctgtaccatcacttgcaaatgcggtgctgggggacaaattccagtttgaa
cgccttggttacttcgctgtggattcagactcaacgcctgagcggctggtgttcaacaga
acggttaccttaaaggactcctatggaaaagctgggcccaagtga
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