Panicum virgatum (switchgrass): 120697989
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Entry
120697989 CDS
T07260
Name
(RefSeq) beta-galactosidase 8-like isoform X1
KO
K12309
beta-galactosidase [EC:
3.2.1.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00052
Galactose metabolism
pvir00511
Other glycan degradation
pvir00531
Glycosaminoglycan degradation
pvir00600
Sphingolipid metabolism
pvir00604
Glycosphingolipid biosynthesis - ganglio series
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
120697989
09103 Lipid metabolism
00600 Sphingolipid metabolism
120697989
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120697989
00604 Glycosphingolipid biosynthesis - ganglio series
120697989
00511 Other glycan degradation
120697989
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120697989
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
120697989
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120697989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_35
BetaGal_ABD_1
BetaGal_gal-bd
Glyco_hydro_42
BetaGal_ABD2
OxoDH_E1alpha_N
Motif
Other DBs
NCBI-GeneID:
120697989
NCBI-ProteinID:
XP_039837332
LinkDB
All DBs
Position
3K:17493969..17500977
Genome browser
AA seq
725 aa
AA seq
DB search
MASGGAFRNLRLAVLCLALTSSVGGEASRRFWIENDTFMKDGAPFQIVGGDVHYFRIVPE
VRFFLFFLAGVPAFFFFGTAGVPALLLRSSCVTVSETGVEPICNCWILLQEFHQLPQYWK
DRLLRAKALGLNTIQTYVPWNLHEPEPQSWEFNGFADLESYLRLAQELGMLVMLRVGPYI
CGEWDLGGFPPWLLAIEPALKLRSSDSTYLSLVGRWWGVLFPKVAPLLYSNGGPVIMVQI
ENEFGSFGDDKNYLHYLVQLARRYLGDDIVLYTTDGGAMGNLKNGSISQDDVFAAVDFET
GSNPWPIFRLQKKYNLPGKSAPLSSEFYTGWLTHWGESMATTDATSTAKSLKTILCRNGS
AVLYMAHGGTNFGFYSGANTGQDESDYKPDLTSYDYDAPIKEHGDVHNSKYKALRRVIHE
CIGSPLHPLPSDIEKANYGLVKLQKVTSLFDIIANISDPLRCAVSEHPLYMEQIGQMFGF
LLYMSEYQGKLPSSILSIPKVHDRAQVFLSCSTDSVRNPRYVGVIERWSSKTLEIPNLGC
SANTSLYILVENMGRINYGAYIFDRKGILSPIQIDGVTLHHWKMYPLTFNSLDNLPKLQL
ITQMPDVRASKVSVIHGHSEKKFQESSFYLNEPEFYEGHFHIDSESEMKDTFISFRGWNK
GVVFVNNFNIGRFWPARGPQCALYVPGPILRPGDNVIVIFELHGPNPELTVNLVTDPDFT
CGPKQ
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggtggagccttccgcaaccttcgcctggcggtcctctgcctcgcgctcacc
tcgtcggtcggtggcgaggcgtcgagaagattctggatcgagaatgataccttcatgaag
gatggggcgccgttccagatcgtcggcggcgacgtccactacttccgcattgttcctgag
gtgagatttttcctcttttttttagcaggtgttcctgcgttttttttttttggaacagca
ggtgttcctgcgttgctcctgagaagtagctgcgtgacagtctctgagactggtgttgaa
ccaatttgtaactgctggatccttctccaagagtttcatcagttgcctcaatactggaag
gatcgccttttaagagcaaaggcactaggcttgaacacaattcaaacatatgtaccttgg
aatctgcatgagccagaaccacagagttgggaattcaatgggtttgcagatcttgaatca
tatctgagacttgctcaagaattaggaatgctggtcatgcttcgtgtaggtccatacatt
tgtggagaatgggacttaggaggttttccaccttggttgctcgccatagaacctgctctt
aaactgcgatcatctgattcgacatatctctccttggtggggagatggtggggagtacta
tttccaaaagtagcaccattattgtacagcaatggaggtccagttattatggttcagatt
gaaaatgaatttggttcatttggagatgacaagaattaccttcattaccttgttcaactg
gctagaagatatcttggagatgacattgttctttatacaactgatgggggcgccatgggc
aatttaaagaatggatcaatttctcaagatgatgtttttgctgctgttgattttgaaacc
ggatccaatccatggcccatattcagattacagaagaaatacaacttaccaggaaaatca
gcccctctaagttcggaattttatactgggtggctaacacactggggtgaaagtatggca
acaacagatgccactagtacggcgaaatcccttaaaacaattttgtgccgcaatggttct
gctgtactttatatggctcatggtgggaccaattttggattttatagtggtgcaaatact
ggccaagatgaatctgattacaagccagacctcacttcttatgactatgatgcaccaatt
aaggagcatggagatgtgcataattcaaaatacaaagcgctgagaagagtaatacatgaa
tgtatcgggtctcctcttcatccacttccttctgacattgaaaaagcaaattacgggctt
gtgaaattacagaaggttacttctttgtttgacatcattgctaacatcagtgatcctttg
agatgtgctgtttcagagcatccactgtatatggaacaaataggccagatgtttgggttt
ctattgtacatgtcagaataccaagggaaactcccatcaagcattctatcaatcccaaag
gtacatgacagagctcaggtgttcctgtcttgctcaactgacagtgtcagaaacccaaga
tatgttggtgtaattgaaagatggtctagtaaaacactagaaataccaaatttaggatgt
tcagctaatacaagcctatatatcctggtagaaaatatgggtcgtataaattatggggca
tatatttttgaccgaaaaggaatactatctcctattcaaatagatggtgtcactctccat
cactggaaaatgtatccacttacattcaattcactggacaaccttccaaaactccaacta
atcactcaaatgcctgatgttagagctagtaaagtgtccgttattcatggtcactcagaa
aagaaattccaggaatcgtcgttctatttgaatgaacctgaattttatgaaggccatttc
catattgactctgagagtgagatgaaggatacatttatatcatttcgtggttggaacaag
ggtgttgtttttgtgaacaacttcaacattggaagattttggccggcacgtggaccacag
tgtgccctttatgttcccgggccaatcctcagacctggagacaacgtcattgtaatcttt
gaactgcacggtccaaatcctgagctcaccgtcaacttagtaacagatccagatttcaca
tgcggtccaaaacagtga
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