Panicum virgatum (switchgrass): 120698957
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Entry
120698957 CDS
T07260
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X1
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120698957
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120698957
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120698957
03036 Chromosome and associated proteins [BR:
pvir03036
]
120698957
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120698957
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120698957
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120698957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
PDS5
Htt_N-HEAT_1
Vac14_Fab1_bd
SCD
Cnd1
CLASP_N
TAF6_C
Adaptin_N
CEP104-like_TOG
DUF3102
Motif
Other DBs
NCBI-GeneID:
120698957
NCBI-ProteinID:
XP_039838701
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All DBs
Position
3K:complement(31222317..31227524)
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AA seq
587 aa
AA seq
DB search
MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDE
DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKES
DIVDWFIPVVKRLAAGEWFTARVSSCGLFHIAYPSAPDQLKTELRTIYGQLCQDDMPMVR
RAAASNLGKFAATVEQNHLKTEIMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRADLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILSPQLSIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWAMQHIIPQV
LEKINNPHYLYRMTILQAISLLAPVMGAEITCQKLLPVVINSSKDRVPNIKFNVAKVLQS
LIPILDQSVVEKTLRQCLVELSEDPDVDVRYYANQALQACDQMMVSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggctatgattgatgagcctctgtatccaattgctgtactgattgacgagcttaagaat
gaggatatccaattgcgtctaaactcaatcagaagactttctacaattgctcgggcgctc
ggggaagaaagaaccagaaaggaactgattccatttcttagtgaaaacaatgatgatgaa
gatgaggtgcttcttgcaatggctgaggaattgggtgtgttcattccttatgttgggggt
gtagaacatgctcatgttttgcttccaccgttggagacattgtgtacggtggaggaaact
tgtgtccgcgataaggcagttgaatctctgtgccgtattggtgcacagatgaaggaaagt
gacattgtggactggttcattccagtagtaaagaggctagcagcaggtgagtggtttaca
gctcgggtatcatcttgtgggcttttccacatagcctatccaagcgcaccagaccaactg
aaaacagaattgaggactatatatggtcagctatgtcaggatgacatgcctatggtcaga
agagctgctgcatcaaatcttggaaagtttgctgccacagttgaacagaatcatctgaag
acagaaataatgtctatatttgatgatctaacccaagatgatcaagattctgtgcgtttg
ttggctgttgaaggctgtgctgctcttggtaaattgttggaaccacaagattgtgtagca
catattctcccagttattgtcaatttttcccaggataaatcctggcgtgttcgttatatg
gttgccaatcaattgtatgagctctgtgaggctgttggtcctgagcctacgagagctgat
ttagtgcctgcatatgttcgtctccttcgtgacaatgaggctgaagtgcggatagcagct
gctggaaaagttactaagttctgtcgcatattaagtccgcagctctccatccaacatatt
cttccatgtgttaaggaattgtcatcagattcgtcccagcatgttcgttcagctttggct
tcagtcattatggggatggctcctgtattggggaaggatgctaccattgaacaacttctt
cctatatttctttctttgttgaaggatgaatttcctgatgttcgactcaacataatcagc
aaacttgatcaagtgaatcaggttattggaattgatttgctttctcaatcactgctacca
gccattgtagaacttgcagaggataggcactggagagtccggcttgcaataattgagtac
atcccattgttggcaagtcagctaggtgttgggtttttcgatgacaagttgggtgcactc
tgcatgcaatggttggaagataaggtcttctcaatcagagatgctgctgctaacaacttg
aagcggcttgcagaagagtttggtcctgagtgggcgatgcagcatataattcctcaggtg
ctggaaaagatcaacaacccgcactacctgtatcgcatgacaattctgcaagctatctca
ttgctggcccctgtaatgggtgcagaaatcacttgtcaaaagctgcttccagtcgtcatt
aattcctcaaaggacagggttcctaacatcaagttcaatgttgcaaaagtattgcagtcg
ctaataccaatcctcgatcaatccgttgtggaaaagaccttgaggcaatgccttgttgag
ctcagcgaggatcctgatgtggatgtaagatactacgcaaaccaggcactgcaggcgtgc
gatcaaatgatggtgtcaagctaa
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