Panicum virgatum (switchgrass): 120703911
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Entry
120703911 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120703911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120703911
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120703911
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120703911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120703911
NCBI-ProteinID:
XP_039844048
LinkDB
All DBs
Position
4K:38673004..38693675
Genome browser
AA seq
1677 aa
AA seq
DB search
MADLRGIEATSEEVDSIHFSFYSDDEIKRISVKKITKSERLDAKNHPVPGGLLDPAMGPI
NDNDTCKSCGQHSGRCPGHFGHIELAKPLFNPLLFMSLRNLLHATCFHCHKFRLNNEQVD
RYANELELLVKGDVARAKNLEDSGKEASLSENDEDSTEATSGDKSSPEKDKKTWTSIQLK
EILSIFSKIMKKRQKKCAKCDYKNPSITSPIYGWLVKDTSASAVRANAVADFKLKGDGSA
HNSGETGVSGLDEELTSPQSKGSINEARRLSDDTIKEMVASSGKKHLLPTEVEFILKNLW
KNEAKFCMLLCDFQQNTLSVSEKRRGYEMFFLNSLLVAPNRFRPSTSSSLGIMEHPQNVL
LSKVQEANLLLQNNSAGSDHMDVLRRWMDLQRSVNVLYDSSKGLVKSEKNAHGIRQLLEK
KEGVLRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNAKKLQEA
VRNGADIHPGATHYRDNDNMYKLQAAPDKRSAISRKLPASRGSISQLGKDPNCKFESKVV
YRHLQDGDIVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHF
PQDEISRSEAMNIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKQDTFLSREEYSQLVY
GSCVPSNCGPRQPGVKVSAIKDDGALELVLPAILRPKPLWTGKQVITTILNHITKGRRPF
TVEQKGKITEEFLIPPKEETEKKRKVGEGEKEKEEERKKDISELVLYVRGNELIKGMIDK
AQFGKYGIVHTVHEFYGADTAGILLSTFSRLFTLFLQLHGFTCGIDDLLLSQQSNETRRK
ILAESEESGTNVHMEFTQKTKVDLEDLALEMKVEKVVRSNGEFATVTLDRMMSNKLNEIT
TTANKELLPHGLEKPFHRNCLSLMTATGAKGGMVNMTQISSLLGQQALEGKRVPRMVSGK
TLPCFPPWDTSSRAGGFICDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI
KCLESLKVSYDHTVRDVDGSIVQFQYGEDGVDVLKTSFLNKFKELADNKRVVLDNIGGRN
QILFDQKVEKKKLLPNLNCYITKLPKKLRKEAATFLKVSKEKKSCDIDEEELLKLLKIKY
IYSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKEILMTASANIS
TPFMKGPLLKGKTREDAERVAAKFRRVCVAHIVEKIEVCTVPFYNSNGHVSTLYKLQMKL
YPQEQYPLSDLTVDECQATLRTDFVGAMENAIDKHLDLLRKINKIRAVKVEDTEGSLSDG
GEESESGHADGEDTGMSDGDDENDNEDDLGTDAEKRKRQEKDEMEYDDDTENEEEIDSES
EEETNIKRQSDEDPAESGDDLLEAEEEHKTSKSQMTSVGEVSYSSKKGATSKDKLKAAKL
QEKSQTDGISDESKADQITSKRGKKLKRTVHVESKGLDFEIHYAFHDEPHILLSQIAQKT
ARTVFVRACNNIGKCSVMPPKGIPEHLETSGVNFEIFYNLEDYISINEIKSNDIHAMLKT
YGVEAAQATIIQEVKSVFTVYGIDVDPRHLSMIADFMTFDGGFRPMNRLGMGQFSTSPFG
KMTFETATKFIVDAATHGEADSLECPSASVCLGKPAKVGTGTFSLLQNFSVDQPMVM
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggccgacttgcggggtatcgaggcaacatctgaggaagtggattcgatccacttcagc
ttctatagtgatgatgaaattaagaggatcagtgttaaaaagatcaccaagtcagagcgc
cttgatgccaaaaaccatcctgtgccaggtggattacttgatcctgcaatgggacccatc
aatgataatgatacctgcaagagttgtggtcagcattctggtcgttgccctggtcacttc
ggtcatattgagttggcaaaaccattgttcaaccctttgctgtttatgagtctgagaaac
cttctccatgccacatgcttccattgtcacaagttccgtttgaacaatgaacaggttgac
agatatgcaaatgaacttgaactgttagtaaagggtgatgttgctcgcgctaaaaatttg
gaagactcaggtaaagaagcatctctttcagagaatgatgaagacagtactgaggccact
tcaggtgataaatcatctcctgagaaagacaagaaaacctggacatcaatccaactgaaa
gagattttgtctattttttccaagataatgaaaaagagacagaagaagtgcgcaaaatgc
gactataagaacccatcaatcacaagtcctatatatggctggctggtcaaggacacaagt
gcttctgctgtaagagcaaatgcagttgccgactttaaacttaagggagatggcagtgct
cacaattcaggggaaactggggtttctggtcttgatgaagaactaacttcgcctcaatcc
aaaggatcaatcaatgaagctagacgcctttctgatgacaccattaaagaaatggtggca
tcatcaggaaagaagcatctattgcctacagaggttgaatttattctcaagaacttgtgg
aaaaatgaagccaagttctgcatgttactttgtgacttccagcagaatacgttaagtgta
tcagaaaaaagaaggggctatgagatgtttttcttgaatagtctacttgttgcaccaaat
agattccgtccgtcaactagctctagtcttggaattatggaacatccacaaaatgttctg
ctaagtaaagtgcaagaagccaatcttttgctccagaataacagtgctggttctgatcat
atggatgttcttagaagatggatggatctacaacggagtgtaaatgtgttatatgatagt
agcaaaggcctcgtaaaaagcgagaagaatgctcatggtatacgtcaattgttggaaaag
aaagaaggggttcttcgacagaagatgatggggaagagggttaattatgcatgccgatct
gttatatctccagatccgtacttggctgttaatgaaattggcattcctcctgtttttgca
acacggttgacgtatcctgagaaagtaacaccctggaatgcaaaaaaactacaagaagct
gtaaggaatggtgctgatattcacccaggtgcaacacattacagggacaatgataacatg
tacaagttacaggcagcgcctgacaaacgcagtgccatttctaggaagctacctgcatcc
agaggatcaatttctcagctagggaaagatccaaattgcaaatttgaaagcaaggttgta
tatcgtcatcttcaagatggtgacattgtacttgtcaataggcagcctacgcttcacaag
cccagcatgatggctcattttgttcgtgtgttgcctggagaaaagacaatacgaatgcac
tatgccaattgcagcacgtacaatgctgattttgatggagatgagatgaatgtgcacttc
ccacaagatgaaatatctcgttctgaggctatgaatattgttgatgcaaacaagcaatac
attggtcctaggagtggggatgctgtcagaggtctcatacaggaccacattgttggtgct
gtactactgacaaaacaggacacctttctaagccgtgaagaatatagtcagcttgtctat
gggtcttgtgtgccctcaaattgtggccctcgtcaacctggtgtaaaagtgtctgctatt
aaggatgatggtgcactagaacttgtccttcctgctattttgaggcccaagccattatgg
acaggaaaacaggttataacaaccatcttgaatcatataacaaaaggccgtcgtccattc
actgtggagcagaagggaaaaataacagaagaatttctaatccctcctaaagaagaaaca
gaaaaaaagagaaaagtaggagagggagaaaaggaaaaagaagaagaaagaaaaaaagat
atttccgaactggttttatatgttcgtggtaatgagctcataaagggaatgatagataag
gcccagttcgggaagtacggcatagtacatacagttcatgaattctatggtgcagataca
gctggaatactgctctcaacattcagccgcttgtttacgcttttcttgcagctgcatggg
tttacttgtgggatagatgacctgctactatcccaacaatccaatgaaacgagaagaaaa
attctcgctgaaagtgaagagagcggtacaaatgtccacatggaatttacacaaaaaact
aaagtggatcttgaagacctggcattggaaatgaaggtggagaaagttgtaagaagtaat
ggtgaatttgccactgttacattggacagaatgatgagtaataaactgaacgagataaca
actacagccaataaagaattattgcctcatggtctagaaaagccttttcatagaaattgt
ctctctcttatgactgcaactggtgctaaaggtggcatggtcaacatgacacaaatatca
tcattgttaggccagcaagcgttagaaggaaagcgtgttccacggatggtttctgggaag
actttgccatgctttccaccatgggatacttcttcaagagctggtggtttcatctgtgat
cgatttttaactggtttgcgccctcaagagtattactttcactgtatggcaggcagagag
gggttggttgacacagcagtcaagacatcccgcagtggatatcttcagcgctgtcttatt
aaatgtctggaatcgttgaaagtctcatacgatcacactgtacgggatgttgatggatca
attgtacagttccagtatggagaagatggagttgatgtgctgaaaactagctttctcaac
aagttcaaagaacttgctgataacaaaagagttgtccttgacaacataggtggccgcaat
cagatactgtttgatcagaaagtagaaaagaaaaagctgttaccaaacttgaattgctac
attactaaactgcctaagaagttgcgtaaagaagcagccacatttcttaaggtatcaaag
gaaaagaaaagctgtgacatcgatgaggaggaactactgaagttactgaaaatcaaatac
atatatagtcttgtagatcctggtgaggctgttggtgtggttgctgctcagtcaatagga
gaaccttcaacgcagatgacgctcaacacttttcatcttgctggaaggggtgagatgaat
gtaacccttggtatacctcgtttaaaagaaattctgatgactgcatcagctaatattagt
acgccttttatgaagggtccgctgcttaaaggaaagactagggaagatgctgagcgggtg
gctgcaaagtttagaagagtttgtgtggctcatatagtggagaaaattgaagtatgcaca
gttcccttttacaacagtaatgggcatgtttcgaccctgtacaagctacaaatgaaactt
taccctcaggagcaataccctctgtcggatcttactgtagatgagtgtcaggcaaccttg
agaacagattttgttggtgcaatggaaaatgcaattgataagcatctagatctgctacgc
aaaattaataaaatccgtgctgttaaggtagaagatacagagggctctttatcagatggt
ggtgaagaatctgaaagtggacatgctgacggtgaagacactggtatgagtgatggtgat
gatgaaaatgataatgaagatgatttgggaactgatgcagaaaagaggaaacgacaagag
aaagatgagatggagtatgatgatgatactgaaaacgaagaggaaatagatagtgaatct
gaggaagagaccaacattaaacgtcagagcgatgaggatcctgctgagtcaggtgatgat
ttgctagaggctgaggaagaacacaaaacctcaaagtctcagatgacttcagtgggcgaa
gtgtcatattcttccaaaaagggggcaacttcaaaagataagctaaaggcagctaaactt
caagaaaaaagtcaaactgatggtatatcagatgagagtaaagcggatcaaataacttcc
aagcgtgggaaaaagttaaaacggactgtccatgttgaatccaaaggtttggattttgag
attcactacgcctttcatgatgaacctcacattctactatctcagattgcccagaagaca
gctaggactgtttttgtgagggcctgcaataacattggcaaatgttcagtcatgccaccg
aaaggtatccctgagcatctggaaacgtccggagtgaactttgaaattttctacaacctt
gaggactacattagcatcaatgagatcaagtcaaacgatatacatgcaatgctgaagaca
tatggggtggaggctgcacaggccaccatcatccaggaagtgaaaagtgtgtttaccgtc
tacggcatcgatgtggacccgaggcacctgagcatgattgccgacttcatgacctttgac
ggcgggttccgacccatgaacaggctggggatgggccagttcagcacctcaccattcggc
aagatgacgttcgagacggcgaccaagttcatcgtggatgcggccacgcatggggaggcg
gactcactagagtgcccctcggccagtgtctgcctcgggaagccagcgaaggtggggacg
gggacctttagtttgctacagaactttagtgtcgatcagcccatggtgatgtaa
DBGET
integrated database retrieval system
