Panicum virgatum (switchgrass): 120704223
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Entry
120704223 CDS
T07260
Name
(RefSeq) solanesyl-diphosphate synthase 1, mitochondrial isoform X1
KO
K14066
geranyl diphosphate synthase [EC:
2.5.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120704223
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120704223
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120704223
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120704223
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Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
HEPPP_synt_1
Motif
Other DBs
NCBI-GeneID:
120704223
NCBI-ProteinID:
XP_039844463
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All DBs
Position
4K:complement(43992544..43997322)
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AA seq
429 aa
AA seq
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MSWRWALARRVAALAAGSGAGGAAQAQRLLTTSSGAGAALLGRQHLPLASQIRSKVVGCR
GAAFVSSRWLHDAQYQVRPDGDSRSQEHRDPFELVADDLSLVADRLRSMVAAEVPKLASA
AEYFFKVGAEGKKFRPTVLLLMASALKFPLSESTEGGVLSILADKLRAPHLNIAEITEMI
HVASLLHDDVLDDADTRRGVSSLNLVMGNKLSVLAGDFLLSRACVALAALGNTEVVSLMA
TAVEHLVTGETMQISTSREQRRSMEHYLQKTYYKTASLISNSCKAVAILAGHTAEVSMLA
YEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILYAMEEFPQLHEVVDS
GFDNPANVELALDYLQKSRGIERTKELAREHANRAIKAIEALPDSDDEDVLTSRRALIDI
TERVITRTK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggcggtgggctctcgcgcgccgcgtcgccgcgctggccgccgggagcggggca
ggcggcgcggcccaggcgcagaggctcctgacgacctcgtccggcgcgggcgccgcccta
ctggggcggcagcacctgcccctggcctcccagattcggagcaaggtggtgggttgcaga
ggagctgctttcgtgagctccagatggctacatgatgcgcaataccaggttcgccctgat
ggggattcaaggtctcaggaacacagagatccatttgaattagttgccgatgatctatca
ctcgttgcagatagattacgatccatggtggctgctgaggtccccaaactggcatcagca
gctgagtactttttcaaagtgggagctgaggggaaaaaattccgacctacggttttgtta
ctgatggcttcagctctcaaattccccctgtcagaatcaacagaaggcggagttctcagt
atcttagcggataaactccgcgcaccccatctgaacattgcagagataacggagatgatt
catgtcgcaagccttctgcatgatgatgttctagatgatgctgatactaggcgtggtgtc
agttcgttgaatcttgttatggggaacaagctctctgtattggcaggtgacttcctcctg
tctagagcatgtgtggcacttgcagcacttgggaacacagaggtggtatccctaatggca
actgctgtagaacatctagttactggtgaaactatgcagatctcaacaagcagagagcaa
cgacgaagcatggaacactacctgcagaagacatactacaaaacagcatcactgatatca
aatagttgcaaggctgttgctattcttgcagggcacactgctgaggtctcaatgcttgcg
tacgaatatggtcgaaacttgggtttggcgttccagttgattgacgatgttctagatttc
acgggcacatccgcatcccttgggaagggttcattatctgatattcgccatggaatcatt
actgccccaattctatatgcaatggaggaattcccgcaactacatgaagttgttgacagc
ggtttcgacaatcctgcaaatgttgaacttgcccttgactatctccagaagagccgtgga
attgaaaggacgaaagagcttgcacgggaacatgctaaccgtgcaatcaaagctatagaa
gccctcccggatagcgacgacgaggatgttctgacttcgagacgcgctcttattgacata
acagagagagtcatcacaaggacaaagtag
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