Panicum virgatum (switchgrass): 120705797
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Entry
120705797 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120705797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120705797
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120705797
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
120705797
NCBI-ProteinID:
XP_039846247
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Position
5K:4646479..4655904
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AA seq
1218 aa
AA seq
DB search
MQPRRQQQQSILSFLQKPPLDRAGAGEGTPPEKPPRPPAGSVASIMERLVRPPPLSQGRN
QDASQVGHLDGKTLTGRNQVPSNGHSTALFSGPCNGEYSGATMFPKQGLGMTPAQEPQKY
PLRSSTDEFFQASMLLPEFGLNQSPLQEHPKKLLSESPNNGCIQSTSLFEDFGIQTPSQV
SSKKIFLGPAHGADTPLTDHGSDRTHLQHLAKKFSLVSANGEYARAATTSVLNSNDIHTE
EPSKKLCPESSVPLYIKATNLFAELEANESPLKNNSKSSSFLMSDKHIGATSALFPELDS
SPLKPETPAMRAVIPRLKRVQEEQGVADNKQCLPLWVSNKKMKSAHCSPVEKKDEMADSA
RSKFEWLNPSTIRDANRRRPDDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKYMDAVLF
FKVGKFYELYEIDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLVARGYKVGRI
EQMESANQAKARGSNSVIERKLLHVSTPSTAVDGNIGTDAVHLLALKEVTLSSSGSRVYG
FTFLDYAALKIWVGSLHDDDSSAALGALLVQVSPREIIYETSGLSKETHKAIRKYASAGS
VKMQLTPLPGIDFSDVSQIRMLIHSNEYFTASAESWSSALDCVFNRDAVICALGGLIGHL
TRLMLHDALKNGEVLPYHVYKTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCVTSS
GKRLLRRWICHPLKDIDAINERLDVVEAFIQNCGLGPITRGYLHKIPDLERLLGQVRSTV
GLSSSVTLPFVGERILKKRIKTFIMLINGLRNGLDLLNDLQRADHGASALYKAVEIPTLS
SLHELIHKFEEEVQNQFPHYYQDNDVKDGDRNKLAVLVEDFVGKASEWSLVINAVSTIDV
LRSFAEMTLSSFGAMCRPHVILKDDVPILRMKGLWHPYAFAGSANGLVPNDLTLGQDLSD
LNRFALLLTGPNMGGKSTIMRATCLAIALAQLGCYVPCTSCELTLADSIFTRLGATDRIM
SGESTFLVECTETASVLQNATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVERVRCRLL
FATHYHSLTKEFASHPHVSLQHMACMFRPRSNGEKELTFLYRLASGACPESYGLQVATMA
GIPRSIVEKASIAGQAMRSKIAGNFKSSEQRAEFSTLHEEWLRTALAVIVKDGHLDEDIM
DTVYCISQELKAHFKKDR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcggcggcagcagcagcagtcgatcctctcgttccttcagaagccgccgctg
gatcgcgccggcgccggggagggcacgcctcccgagaagcccccgcgcccccccgcgggg
tcggttgccagcatcatggagaggctcgtgcgcccgccgccgctgtctcaggggagaaat
caagatgcttcccaggttggacatttggatgggaaaaccttgactgggagaaatcaagtt
ccctcaaatgggcactcaactgcattgttctcaggaccctgcaatggtgaatacagcgga
gcaaccatgtttccgaaacaaggtttgggtatgactcccgcacaggaaccccagaagtac
ccattgaggtcctccactgatgaattttttcaagcaagcatgttgctcccagaattcggg
ctgaatcaatctcctcttcaagagcatccaaagaagttactctcagagtctcctaataat
ggctgcattcagtctacatccttgtttgaagactttggtatacaaaccccttcacaggtt
tcctcaaagaaaatcttcctagggcctgctcatggagctgatacacctttaacagatcat
ggttcagatcgaactcatttgcagcatttagcaaagaagttctcgttggtttctgctaat
ggtgaatatgctagagcagcaacaacatctgtgctaaattcaaatgatatccatacagag
gaaccttcaaagaagctatgcccagagtcttcagtccctttgtatattaaagcaacaaat
ttgtttgcagaacttgaggcaaatgaaagtccattgaagaataactcgaaaagttcctcc
tttcttatgagtgataagcacattggagcaacttctgcactatttcccgaacttgattct
agtcctctgaagccagagacgccagcaatgcgagcagtcattcctcgcctgaagcgagtt
caagaagaacaaggtgtggctgacaacaaacaatgccttcctttgtgggtctcgaacaag
aagatgaaatcagctcattgttcacctgttgaaaagaaggatgagatggcagatagtgcg
cgtagcaagtttgaatggctgaatccatctaccatcagggatgcaaatagaaggcgtcca
gatgatccactttacgacaagagtacactttttattccacctgatgctttgagaaagatg
tcaacatctcaaaagcaatactggaatattaagtgtaaatacatggatgctgtcctgttt
ttcaaagtgggaaaattttatgaactctatgagatagatgctgagattggccaaaaagaa
cttgactggaaaatgactgttagtggggtgggcaagtgccgacaggttggcatttcagaa
agtgggatagatgatgctgttgataagcttgtagctagggggtataaagttggaagaata
gagcaaatggaatctgcaaaccaggccaaagctagaggatcaaattcagttatcgaaaga
aagctgcttcatgtgtccacaccgtcaactgcagttgatggcaacattggtactgatgct
gtccaccttcttgcattgaaagaggttaccctatcttctagtggttctcgggtctatgga
ttcactttcctagactacgctgctcttaaaatttgggttggatcactccatgatgatgat
tcgtctgcagctttgggggctttgttggtgcaggtttctcccagagaaataatctacgaa
acctcaggcctctcaaaagaaactcataaagcaataagaaagtatgcctcagcaggatct
gtaaagatgcaactgacccccctacctgggatagatttctccgatgtttcacaaattcga
atgttaatacattcgaatgagtactttacagcatcagcagagtcgtggtcatctgctcta
gattgtgtattcaatcgagatgcagttatttgtgcgcttggtggacttattggtcatttg
actaggctcatgttacatgatgccctgaaaaatggggaagtcttaccataccacgtgtac
aaaacctgtctaaggatggatggccagactctcgtgaaccttgaaatttttagcaataac
ttcgatggcggttcatcaggtactttatataagcaccttaatcactgtgtcacatcatct
ggtaagaggctgctaagaaggtggatttgtcatccacttaaggacattgatgccatcaat
gaaaggctcgatgttgttgaggccttcatccagaactgtgggctaggccctataacacgt
ggatatctccacaaaattcctgatcttgagagattgttaggacaagttagatccactgtt
gggttatcgtcttcagtcacattgccctttgttggagaaaggatattaaagaaacggatc
aaaacatttataatgcttatcaacggcctccggaatggacttgatttattaaatgactta
caaagagcagatcatggtgcctcagcactctataaggctgtagagattccaacattgagc
tcccttcatgaattgatccataaatttgaagaggaagtacaaaatcaatttccacattat
taccaggacaatgatgtcaaagatggtgacagaaacaagttggctgttttagtggaagat
tttgttggaaaggcttcggaatggtctttggtgatcaatgctgtgagcactattgatgtg
cttaggtcctttgctgaaatgacactgtcatcatttggcgccatgtgcagaccacacgta
atactaaaagatgatgtgccgatacttcggatgaagggtctatggcatccatatgctttt
gcaggaagtgcaaatgggttagtaccaaatgacttaacccttggtcaggatttatctgac
ctcaatcgctttgcattgttgttgacgggtccaaatatgggtgggaaatctacaatcatg
cgtgccacctgccttgctattgcacttgcccagcttggctgttatgttccctgcacatca
tgtgaattgacccttgcagattccatctttacacgtcttggcgcaacagatcggataatg
tctggagaaagcacatttcttgttgaatgtacagagactgcttctgttcttcagaatgca
actgaggattctcttgtattacttgatgagcttggcagaggaacaagcacatttgatgga
tatgcaattgcgtatgctgtgttccgccacctggtggagcgggtgcgatgccgtctgctc
ttcgccactcactaccactctctgacaaaggagttcgcctcccaccctcacgtgagcctc
cagcacatggcctgcatgttcaggccaaggagcaatggcgagaaggagctcaccttcctc
taccgtctcgcctcaggggcctgtccagagagctatggcctgcaggtcgccacaatggca
gggatcccgaggtcgatagtggagaaagcatccatcgcaggccaggcgatgaggtcaaag
atcgctggcaacttcaagtcgagcgagcagcgtgcagagttctccaccctccatgaagag
tggctgaggacggccttggcggtcatcgtgaaggacggacacctagatgaggacatcatg
gacacggtgtactgcatctcgcaggagctgaaggctcacttcaagaaagacagatga
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