KEGG   Panicum virgatum (switchgrass): 120706262
Entry
120706262         CDS       T07260                                 
Name
(RefSeq) serine/threonine-protein kinase ATM isoform X1
  KO
K04728  serine-protein kinase ATM [EC:2.7.11.1]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    120706262
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:pvir01001]
    120706262
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120706262
   03036 Chromosome and associated proteins [BR:pvir03036]
    120706262
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120706262
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     120706262
Protein kinases [BR:pvir01001]
 Serine/threonine kinases: Other
  PIKK family [OT]
   120706262
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    120706262
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    120706262
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    120706262
SSDB
Motif
Pfam: PI3_PI4_kinase FATC FAT
Other DBs
NCBI-GeneID: 120706262
NCBI-ProteinID: XP_039846792
LinkDB
Position
5K:complement(10848309..10931646)
AA seq 3045 aa
MAGVATARDVEEVIQKLHSDRARVRDEGVKLLGTWLQGDRAASFCRLLGRNTARVKPGHG
HLTGAATWPLLILALLNCVKEDISGKKPGATKSAAARMLRVTIQCAEDVKLSGHSLLLIS
VARQLFSHVWEVVKDGPSFQLEYSMILRQLLAVKEYRYQMKPRTYISFVAHYMKKVTTVL
DAKFSNQASSKDESFRCTLTLHVLLENPPGDYPDIMRDEVINGFSAIFPHIRDEEGKLTR
KLIECINTFLLKDGPNLGYKCVKIHNAVQEFIFRCWPVTLDQALKSLFITYAKVQLKLAR
AIPEILEKLVDIIIKELDKNVNTGPGFLWCEAPRDEKAVSLRCFQEEWMDLSASVFYLVH
KCTLKTPNREKRLKTDHILNLIIDGLSKGSLFWSGSVCFLIHKYGYRVDKSLLISWFEAS
CKALRSVLSHANAIRFQDSILWLLRALKEFSMVLMLKPREEAQFHLTKSEMSIVEGCWQD
IWNSLIHALPLFSSIVLVADAALILLGGMIVRDQVHASFLSEDTWNLQIFKQLPSPSALY
FIACYFSRIGFQGDLSSSIFIRKNLLRSTLELVHSKEFSLLNEQNVVLIPEAIFSLCAAF
VSSPINSSDSLQLFGDCKINSKSLEDETWVLKDELLYSVEALSKITLDSSAKVISDKCHR
IHLPGTIQQPMLLELIDFIKGFVASNDHFEKLDLSTLVFVCSLLCNLIHCSLLSRVMGDK
SSLLQEVLNYITNIIKYIVSFVVKKNVELSHGVTNLSSPLDTMGSTLSSFKSFLSSPIFN
LSRVDNGVSSVVIEGVTELLDELLVAISQLFSQLSSLANNFDGESTGKVLPISCVNSEDL
NPIVDCKSSVADMDLDVMDSGEVESVTSGSGNMGSFLRPLEWKLELVRIISTFFSVSSLH
TWEILYSLVEKESDVKVRQVILLNLCRNIPGPSKTVSSMVHLINDMRDRCASSLLNSTEC
LACVHALLRTLVTLRDGAQSTDGQPQGCKGIFSESQDILLDLVNKATEIGSADWFSRIKL
IDCISSFICLFPDVAQDLIGCLLDMLHDTDYRVRLYLAREIVVLFQTWEGHNELFYDVCS
NIGAKMVAFSVDSPITAREVLAVGPQSVPVIETALITLAHLSVYSEDVEVESVFMISAAA
AIEPSQRELAYALFDSISRKLGYASRSKYVDQVMGPILFRWVACEMSLVSLVEVQEMFGY
SSSEPKNFVEHCSSWLLPFLILRGDAADLNWISKILSQPLSVIIKRYFVPIFGLSIAARC
GTGPEKDLAETALCESLLQLGEISELERDDLIKKHMVSIVAFLLSVSSSAHGPQVPYFSK
EIVALSVKTVVDGFVDTMDDDLANTVVIDKINIFRADRVFKFLLAIHQHVADACHPRHMC
HRLCAIEVLIDVLGHRVVLESTCFYIICIVGNYIQRKPLQGQCCNILSKLLASFDGNSSA
ETVEVLGRQLQVVVPKLIAACLTNEKEERSGTADSSGLLSLLQHLTVDADPLLYDYIREL
EPLPDLDCLKDIREFHTSLSASYASKDQFLKGSLFATGTVLVEVIFTYSSLHIVLLKMRF
SVNSLLCFFFAIFLISLLSRCSCTLSLRMYHKKLLLGDIISRADPSAADIDIVSCWCSDP
DIVSAVWTLVDLCSSSPVANEASPVVADFISRAGVSDAHQVIFHLPTLTQKHPVQLHSGS
TSKDDKLSLDYGISDGILVGLLKLLKTYLSDESVEIIDAASQTLRGILSTAKGLNALQSL
DSLDRSLLMVHSRGVNFQIVEQTILGMDKYCGVSLEDSDMWQTDGRTYKQWLCTLVSSLI
CHCDDIILRLCRSLVFLKVKAAELLFASTLVNIAGNVDSNAAICRLISTKVEEIIFSDSN
DSLKSIHLFLDALNVIRSFYVAEKSRTCPSSTLKDGRSVRSKSRSPATTPSSSWKKVYWL
SVDYLVAARAASRCSCDFTALMYVELWCEEQFNRLAIGPPDFSHEESLPPHVGLLIAAFT
RINEPDSIYGITLANEITSQIIRYEHEGEWSSALEYYDLLVRSSPMEHPGNLTGSLMTGP
SAFRAEDKMLNWKMHKGLMRSLQKTGCSHVLDVYCEGLTHQKGSLQQDAEFIDIQYEAAW
RAGNWDFSFFIPYSSRSSTRTQSYCLFNENLHSCLRSLEKGDSEEFHEKLSRAKMDLVLA
LSNTSKESTKYIHSTILKLQMLDHVTMVWDLRWNLCNRMSESFPKTKKISPVSTVPTGMQ
LELLDKEWNFIVFQTEHNLDLFEPFLAFRRALLKVLGCEEHLVTHLFQSASALRKGLRFS
LAAAALYELKEHCFHQDGGTMPNTFFLSRLEEAKLLRAQGQHDMAISLGKYILQKHSDKK
DISDVYRLVGKWLAETRSSNSRTIIEDYLRPSVDLTEFKTSTDKRYMSRQCRTHFHMAHY
TYSLFKSYEERLSSNEWQAALRLRKYKTRELETLIKRLKSSSKGVKTDYSVKIQELQKQL
ALDREEAEKIQDDRDNFLNLALQGYQRSLVVGGKYDLQVVFRLVSLWFSLSSRDQVVKAM
MKTTKEVQSYKFIPLVYQIASRLGSSNSQGSTNFQIALASLLKKMAIDHPYHTIFQLLAL
ANGDRVKDKQRSRSSFIVDMEKKLAAENLLKELSSCHGALIFQMKQMVEVYIKLAELETK
KEDTNKRISLPREARSICQLELVPVVTATVPVDPCCRYEVGSFPHFSGLADSIMIMNGIN
APKVIECFGSDGNKYRQLAKSGNDDLRQDAVMEQFFSLVNTFLQNHRDTSQRRLRIRTYK
VVPFTPSAGVVEWVNGTVPLGDYLLGSTRISGAHGRYGTGDWTYLQCREYLMSEKDKRRA
FLKICNNFRPVMHHFFLERFLLPADWFQSRLAYTRSVAASSMVGYIVGLGDRHSMNILID
QDTAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEKTLSVMR
ANKEALLTIIEVFIHDPLYKWALSPLKALQRQKETDDTDSCLDDSQEAYEGNKDAARAIL
RVKQKLDGYEDGEMRSVQGQVQQLIQDAVDVDRLCQMFPGWGPWL
NT seq 9138 nt   +upstreamnt  +downstreamnt
atggcgggcgtggcgacggcgcgcgacgtggaggaggtcatccagaagcttcactccgac
cgggccagagtccgcgatgagggggtgaagctgctggggacatggctgcagggcgaccgc
gccgcctcgttctgtcgcctcctcggccgcaacaccgccagggtcaagcccggccacggc
cacctcacgggagccgccacatggccactcctcatcctggcgctcctcaactgcgtcaag
gaggacatctcgggtaagaagcctggtgccaccaaaagcgccgctgcccggatgctccgt
gtcaccatccagtgcgctgaggatgtcaagctatcagggcattccttacttttgatctca
gttgctaggcaacttttcagtcatgtatgggaggtcgtaaaagatggccccagctttcag
ttagagtacagtatgattctcagacaacttttagctgttaaggagtaccgatatcagatg
aaacctcgaacatatatcagttttgtagcgcactacatgaagaaggtcactactgtgctt
gatgcaaaattcagcaaccaggcgagctccaaggatgaatccttccgttgtacattaaca
cttcatgtcctactcgaaaacccgccaggcgattaccctgatatcatgagggatgaggtt
attaacggatttagtgcaatcttcccacatattagggacgaggaggggaaactgacccgc
aaacttattgaatgcatcaacacctttttgctgaaggatggcccaaacctgggatacaaa
tgtgtgaagattcataatgcagttcaagagtttatatttcgttgttggccggtgactctt
gatcaggctttgaagagtttgttcattacctacgcaaaagttcagctgaagcttgccagg
gctattccagagattttggagaaacttgttgacatcatcattaaggaactggacaaaaat
gttaacaccggacctggttttctgtggtgtgaggcacctcgagatgagaaagctgtgtcg
ttaagatgcttccaagaggaatggatggatctatctgctagtgttttttatctggtccac
aaatgcacactgaagacaccgaatagggagaaaaggttgaagacagatcacattctgaac
ctcatcattgatggcctttcgaaaggatctctgttttggagtggctctgtttgttttctg
atccacaagtatggatatcgagtggacaaatctttgctaattagttggtttgaagcaagc
tgcaaagctttgagaagtgtcttgagccatgcaaatgccatacggtttcaggactcgata
ctctggcttctcagggcgctcaaggagttctccatggtgctcatgctcaaacctagggag
gaagcacaatttcatttaacaaaaagcgagatgtcaattgttgaaggttgctggcaagac
atatggaattcccttattcatgcactccctttgtttagcagcattgtgctagttgctgat
gcagcactgattttgctgggtggaatgattgtgagggaccaagttcatgcatcatttcta
tcagaagatacatggaacctgcaaatatttaaacagttgccatcaccgtctgcattgtat
ttcattgcttgttacttctcaaggataggctttcagggtgacttgtccagttcgatcttt
attcggaagaatctgctaagatcaactttggagctagtacattcaaaggaattctctctc
ttgaacgagcaaaatgttgttctcattcctgaagctattttctcactgtgtgctgctttt
gtgtcatcaccaattaattcatcagattcgttacaactatttggtgattgtaaaattaat
tctaagtctcttgaggacgagacctgggttctcaaagatgagctgctctactcagttgaa
gctttatcaaaaatcactctggatagttctgccaaggttatttctgataaatgccaccgc
atacaccttcctgggactatccagcaaccaatgcttcttgagctcatagacttcatcaaa
ggatttgtggcctcaaacgatcattttgagaaattggacttatctactcttgtatttgtc
tgttctcttctctgcaatcttattcattgttcattgttgtcaagggtcatgggagataaa
tcttcacttctgcaggaagtattaaattatatcaccaatattataaaatatattgtgtca
tttgttgtgaaaaagaacgttgaactttctcatggtgttactaacctaagttcaccattg
gatacaatgggctccactttatcctcattcaagagctttctgtcttctccgatatttaat
ctgtctagagttgataatggagttagttctgtggttatcgagggtgttactgaattactc
gatgaactcttggttgcaatttctcagctgttttctcaactctctagtttagctaacaat
tttgatggagagagtaccggtaaagtgttgccaatatcttgtgtaaactcagaagatcta
aatcctattgttgattgcaaaagtagtgttgctgatatggatcttgatgtgatggactct
ggtgaagtagaatctgtcactagtgggagtggaaatatgggtagcttcttacggccattg
gagtggaagctagaactagttagaattatttcaacttttttctcggtgtcatcgcttcat
acatgggaaatcttgtacagcttggtggagaaagaaagtgatgtgaaggttcgtcaggtc
atcttgcttaatctttgcagaaatatccctggtccatctaaaactgtatcttccatggtc
catcttataaatgatatgagggacagatgtgcaagttcattacttaactctacagagtgt
ttagcctgtgtacatgctttgctaagaacattggtaactctccgtgatggtgcgcaaagt
actgatggacagcctcaaggatgcaaagggattttcagtgagagccaggatatcctatta
gacttggtaaataaggctacagagataggttctgcagattggttttctcgaatcaagctc
attgattgcatctcatcctttatttgcctgttccctgatgttgcccaggatctgattggg
tgtttgcttgacatgctgcatgataccgattaccgtgtcaggttgtatttggccagggaa
atcgttgtgttattccaaacgtgggaagggcataatgaattattctatgatgtttgctca
aatattggtgccaagatggtagcattctcagttgactctccaattacagctagagaagtc
ttagctgttggaccacaatctgttcctgtaattgaaactgccctcattactcttgctcat
ttgtctgtgtatagtgaggatgttgaagttgagagcgtgttcatgatttctgctgctgct
gctatagagccttctcagagagaattagcttatgctttatttgattccatctcaagaaag
cttggatatgcttcacggagcaagtatgtggaccaagtgatgggtccaattctttttagg
tgggttgcttgcgagatgagtctagtttcacttgttgaggtgcaagaaatgtttggttat
agttcgtctgagccaaagaatttcgttgaacattgtagctcatggcttctgcctttcctt
attctaaggggtgatgctgctgacctaaattggatatcgaagattttatcgcaacctttg
tctgtcattatcaagagatactttgttccaatcttcggattgtccattgccgccagatgt
ggcacagggccagagaaggacttagcagaaactgccttatgtgaatcacttttgcagctt
ggggaaatttctgagcttgagcgtgatgatctcattaaaaaacatatggtttcaattgtt
gcctttttgctctcagtctcatcatctgctcatgggccacaagtcccatatttctccaag
gagattgttgccctgtcagtgaaaacagttgttgatggatttgtggataccatggatgat
gatttggctaacacagttgttattgataaaattaatatattccgtgccgacagagtattt
aagttcctactggcaatacatcagcatgttgcagatgcttgccatcccaggcacatgtgt
catcggctttgtgcaattgaagttttgatagatgtacttggacacagagtggttcttgag
agcacttgcttctatattatttgtatagtggggaactacatccagcgaaaaccattgcaa
ggccaatgctgtaatatcttgtctaaattgttggcttcttttgatggaaattcctctgct
gaaactgtggaagttcttgggaggcagcttcaggttgtagttccgaagttgatcgctgct
tgcctaactaatgaaaaagaagaaagaagtggtactgcagattcatcagggcttctttct
ttacttcagcacttgacagtggatgctgatcctctgctttatgattacataagagagtta
gaaccacttcctgatcttgattgcttgaaagatatacgagagtttcacacttcactttct
gcttcctatgcttcaaaagatcaattcttgaagggctccttatttgccacaggaactgtt
cttgttgaggtgatatttacttattcgtctctgcatatagtgcttcttaaaatgcgcttc
tctgtcaactccttattatgttttttctttgccatttttctaatatcacttctttcacgt
tgttcttgtactctcagtcttcgtatgtatcacaagaagttattgttgggagatatcatc
agtagagctgatccttctgctgctgatatagacatagttagctgctggtgcagcgaccca
gatatcgtttctgctgtatggactcttgttgacctttgtagctcatctcctgtagcaaat
gaagcttctccggtggttgctgattttatctctagggctggcgtgtctgatgcacatcaa
gtaatattccatctgccaacccttactcaaaagcatcctgtacaattacatagtggttct
acttccaaggatgataaattgtccttagactatggtatttctgatggtattttggttggc
cttctgaaactcttgaagacttatttatctgatgaatctgtagaaataatagatgctgct
tcacaaacattgaggggaattctgtcaacagcaaaggggctcaatgctctgcagagcctt
gattctcttgataggtctttactgatggttcattctagaggtgtaaacttccagatagtt
gaacagactatattgggcatggataagtattgcggtgtttcacttgaagattcagacatg
tggcaaactgatggtcgaacttacaagcaatggttgtgcaccctagtgagctcactcatt
tgccactgcgatgacatcatcttgagactttgcaggagtcttgtttttctcaaagttaag
gctgctgagcttttgtttgcaagcactcttgtgaacatcgctggcaatgttgattccaat
gctgccatctgcagactaatttcaaccaaggttgaggaaataattttttctgactccaat
gattcgctgaagtcaatccatctgtttttggatgcactgaatgtcattagatccttttat
gttgctgaaaaatccagaacttgcccttctagtactctcaaggatggtagatccgttaga
tcaaaaagtcgatcgccagcaacaactccgtcatcgtcatggaaaaaggtgtactggctt
tcagttgattatcttgttgctgccagagctgctagtagatgctcatgtgacttcactgca
ctgatgtatgttgaactttggtgtgaggaacaattcaacaggctggcaataggacctcca
gatttttcacatgaagagtcgctgccaccacatgttggtttgttgattgctgcatttact
cgcataaatgaacccgacagcatttatgggatcacactagccaatgagataacatctcag
atcataagatatgagcacgaaggtgaatggagtagtgctcttgaatattatgatttactc
gtaaggtcatcgccaatggagcatcctggcaatttaacgggttcgctgatgactggacca
tctgcttttagagctgaagataagatgctgaactggaaaatgcacaaaggtctgatgaga
tccttgcagaaaactggatgtagtcatgtgcttgatgtctactgtgaaggtttaacacac
caaaaagggtctcttcaacaagatgcagaatttattgatatacaatatgaagctgcttgg
agggcaggaaactgggatttctcttttttcattccatattcatctcgttcttcaactcgc
acccaaagttattgtctcttcaatgaaaatttacacagttgcttaagatctctggagaaa
ggtgattctgaggagttccatgagaaactatctcgagctaagatggatcttgtgttggct
ttgtcaaatactagcaaggaaagcacaaagtacatacattctaccatccttaagttacag
atgcttgatcatgttaccatggtttgggacctacgttggaacctttgtaatcgaatgtca
gaatcatttccaaaaaccaagaaaatttctcctgtttctactgtccctacagggatgcag
ctggagttgctggacaaagagtggaacttcattgtgttccaaacagaacataaccttgat
cttttcgaacctttcttagcattcaggcgtgccctccttaaggttttaggttgcgaagaa
catcttgtaacacatttatttcaatctgcttctgcactccggaagggattaaggttttct
ttggcagcggctgctttatatgaactgaaagaacattgttttcaccaagatgggggcacc
atgccaaatacttttttcctttctaggcttgaagaggctaaactgctgagagctcaaggg
cagcatgatatggctattagtcttgggaaatacatactgcagaagcattctgacaagaaa
gacatatcagatgtctatcgactagttggcaagtggttggctgaaacaagatcgagcaac
tcgagaactatcattgaggactatttaagaccttctgtggatcttactgaatttaagacg
agcacggacaaaagatacatgtccaggcagtgtcgaacacatttccatatggcacattat
acatatagtttattcaaaagctatgaagaaagactttcatctaatgagtggcaagcagct
ctgcgactaaggaaatacaagactagggagttggagacactgattaaaagactgaaaagt
tcatctaagggtgtaaagactgattactcagtaaaaatccaagagttgcagaaacaactt
gcactagacagagaagaagcagagaagattcaggatgaccgggacaatttcttaaatcta
gcacttcaagggtaccaacgttcccttgttgttggtggcaaatacgacctacaagtggtt
ttccggctggtctcgctgtggtttagtctttcttcaagggatcaagttgtgaaagcaatg
atgaaaacgacaaaagaggtccaatcctacaaattcataccattagtttaccaaattgct
tcgagacttggaagctccaattctcaagggtcaacaaacttccagattgcattagcttct
cttctgaagaaaatggctattgatcacccatatcatacaatatttcagcttttggctctg
gcaaatggtgatcgtgttaaagacaagcaaaggagtagaagttctttcattgtagatatg
gagaagaagcttgctgctgaaaatctgttaaaggagctatcttcctgtcatggagctttg
atttttcagatgaaacaaatggtagaggtctacattaagttggctgaactggagaccaag
aaggaagacactaacaaaagaatttcgctgcctagggaggcccgaagcatttgtcagctt
gaacttgttcccgttgtgactgctacagttccagtcgacccttgttgtcggtatgaagta
ggttcctttccacatttcagcgggttggccgactctattatgataatgaatggaattaat
gctcccaaagttatagaatgttttggctcagacggtaacaaataccgccaacttgcaaaa
tctggaaatgacgacctgcgacaggatgctgtcatggagcaatttttcagtttggtaaat
actttcttgcaaaatcacagagatacttctcaaaggagattgagaatccgtacatataag
gttgttccttttaccccaagtgctggtgttgttgaatgggtaaatggcacggttccactc
ggtgactatctgttggggagtactagaatcagtggagcacatggacgatatggaactggg
gattggacatatcttcaatgcagagagtacttgatgagtgagaaggacaaaaggagggca
tttcttaaaatctgcaacaactttaggcctgtaatgcaccacttctttctcgagagattc
ttgctgcctgctgattggttccaaagtagacttgcttacacgagaagtgtggcagcaagc
tcaatggtaggatacatcgtgggacttggggatcgccattccatgaatattctaattgac
caagacacagccgaggttgtacacattgatcttggtgttgcatttgaacagggtctcatg
cttaaaacacctgaacgggttccatttcgactgacaagggacattatagatggcatgggc
attactggtgttgaaggtgtgtttagaagatgctgtgagaaaactctctcggtcatgagg
gcaaataaggaagcgttgctcactattattgaagtttttattcatgatcctctatataaa
tgggcactctcaccactgaaagctttacagcgtcaaaaggaaacagatgatactgactca
tgtttggatgactctcaagaggcttacgagggcaacaaggatgcagctcgtgctatactc
cgtgttaaacagaagctggatgggtacgaagatggtgagatgagaagcgtgcagggccag
gtccaacaactcatacaggatgcagtagatgtcgatcggttgtgccaaatgtttcctggt
tggggaccttggttgtaa

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