Panicum virgatum (switchgrass): 120706307
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Entry
120706307 CDS
T07260
Name
(RefSeq) sphingosine-1-phosphate lyase-like
KO
K01634
sphinganine-1-phosphate aldolase [EC:
4.1.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
Module
pvir_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120706307
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.2 Aldehyde-lyases
4.1.2.27 sphinganine-1-phosphate aldolase
120706307
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Motif
Pfam:
Pyridoxal_deC
Aminotran_5
Aminotran_1_2
NifW
Motif
Other DBs
NCBI-GeneID:
120706307
NCBI-ProteinID:
XP_039846853
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Position
5K:11356122..11363147
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AA seq
535 aa
AA seq
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MEAAAELALRLRAAANGRLARCEPLALVAAPLLALLVARLVHAAASAVADRGLVAIAIAA
VKLLPGVSGYIAAEKKKVVDKMQSGGTSSKNNRRAELPTIGLGEEVIKDLETLKAKDVDW
QGKCSGTVYIAGSESEGHFELINKAYSMFSHTNPLHQDVFKSVAHMEAEVVAMTAALLGS
KEKSSGGQICGNMTSGGTESILLAVKTSRDYMRSKKGITKPEMIIAESAHSAYDKAAEYF
NIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRYDICL
HVDLCLGGFVLPFACKLGYPIPPFDFSVKGVTSISSDVHKYGLAPKGTSVVLYRNHEIRK
HQFVAVTEWTGGLYISPTIAGSRPGGLIAGAWAAMMSLGLNGYLDSTSRIMEVSKKIQRG
IDEIPGLFVIGKPDMTVVAFGSDVVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTT
VYGEFLKDLQDSVNTVKANPGPISGGMAPIYGAAGKMPDRGTVKELLVEFMDSSC
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggcggagctggcgctgcgcctgcgggcggccgccaacggccgcctcgcg
cgctgcgagccgctggcgctcgtcgccgcgccgctcctcgcgctcctcgtcgcgcgcctc
gtccacgccgccgccagcgccgtcgccgaccggggcctcgtcgccatcgccatcgccgcc
gtcaagttgctgccgggagtctccggctacatcgcggcggagaagaagaaggttgttgac
aagatgcaatctggtgggacctcgtccaagaacaaccggcgagctgagttgccaaccatt
ggccttggtgaggaagtgataaaggatcttgaaacattgaaggccaaagatgtagactgg
cagggaaagtgctctggcacagtatatatcgctggaagtgagtctgagggccattttgaa
ttgataaacaaagcttactctatgttttcacacactaatccgctgcatcaagatgtattc
aagagtgtggcacacatggaagctgaagtagttgcaatgacagctgctttgcttggcagc
aaagaaaaatcatccggtggacaaatttgcggcaacatgacatctggtggaactgaaagc
atattattagcagtcaaaacatcgcgtgactatatgcgatcaaagaaaggaattacaaag
cctgaaatgataattgctgaatcagcacattctgcatatgacaaggctgctgaatatttc
aatattaaagtgcgtcgtgtgcctgtgaacaaagagtttcttgcagatgtgaaaggattc
aagcgatgcataaatggaaacaccataatgatggttggatctgcaccaggatttccgcat
ggtttaattgatcctattgaggaactgggggagctggcttcacgctatgacatttgcttg
catgttgatttatgccttggtggcttcgtattgccttttgcctgtaagcttgggtaccct
attcctccttttgatttttctgtcaagggtgttacatcaatctcatcagatgttcataag
tatggattagccccaaagggcacaagtgttgtcctgtacagaaatcatgaaattagaaag
catcaatttgttgctgttaccgagtggaccggtgggctttatatttctcccaccattgct
ggaagcaggccaggtggattaattgcaggagcttgggctgctatgatgtctcttggactg
aatggctacttggacagtacaagtcgtatcatggaagtttcaaagaaaatacaaagaggg
attgatgagatcccaggactgtttgtgattgggaaaccagacatgaccgttgtggcattc
ggctcagatgttgtcgacatatttgaggtgaatgacataatgtcatcgaaaggctggcac
cttaatgctctgcagagacctaacagtttacacatttgcgtgaccctccaacacacaact
gtttatggggagttcctgaaggacctgcaagattctgtgaacactgtgaaagcaaacccg
ggcccaatcagcggggggatggctcctatctacggcgccgcagggaagatgccagacaga
ggcacggtgaaggagcttcttgtggagttcatggacagctcttgctga
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