Panicum virgatum (switchgrass): 120708289
Help
Entry
120708289 CDS
T07260
Name
(RefSeq) frataxin, mitochondrial-like isoform X1
KO
K19054
frataxin [EC:
1.16.3.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00860
Porphyrin metabolism
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
120708289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120708289
Enzymes [BR:
pvir01000
]
1. Oxidoreductases
1.16 Oxidizing metal ions
1.16.3 With oxygen as acceptor
1.16.3.1 ferroxidase
120708289
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Proteins involved in Fe-S cluster biogenesis
120708289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Frataxin_Cyay
RdRP_5
Motif
Other DBs
NCBI-GeneID:
120708289
NCBI-ProteinID:
XP_039849421
LinkDB
All DBs
Position
5K:50950243..50952089
Genome browser
AA seq
197 aa
AA seq
DB search
MASRKLLLSLTSGRRLRSRTQQLFWAASLPEAATSRSLAAAVAAAQQSGESPVAHLFSSR
TISSTRPATQSAGDAPGSSAVDHKLIMPEDEFHKLADETIHDLLEKLEEYGDSIQMDGFD
IDYGNQVLTLRLGDLGTYVVNKQTPNRQIWLSSPVSGPSRFDWDASTDGWIYKRTGANLV
QLLEKEIGELCGTPVEL
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgcaagcttctcctgagcctcacctccgggaggcggctccggtcccgcact
cagcaactcttctgggccgccagcctccctgaagctgccacctctcgctccctcgcggcc
gccgttgccgcggcgcagcagtcgggcgagtctccagtggctcacctcttctcttcgagg
accatctcgtcgacgcgccccgcgacgcagtccgctggagatgcgcccggttcatctgcg
gtggaccacaagttgataatgcctgaggacgagtttcataaattagcagatgagacgatt
cacgatttgcttgaaaaacttgaggaatatggtgactccattcaaatggatggtttcgac
attgactacgggaatcaggttttgacattgaggctcggggatttgggaacatatgttgta
aacaagcaaacaccaaacagacaaatctggttatcttcacctgtgagtgggccttctagg
tttgattgggatgcatcaacagatggttggatatacaaacggactggagcaaatcttgtg
cagcttctggaaaaggagattggtgagctctgtggtaccccagtagaactttaa
DBGET
integrated database retrieval system
