Panicum virgatum (switchgrass): 120711559
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Entry
120711559 CDS
T07260
Name
(RefSeq) DNA polymerase I A, chloroplastic-like isoform X1
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120711559
03410 Base excision repair
120711559
03420 Nucleotide excision repair
120711559
03440 Homologous recombination
120711559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120711559
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120711559
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120711559
DNA replication proteins [BR:
pvir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
120711559
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
120711559
NER (nucleotide excision repair)
GGR (global genome repair) factors
120711559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
DUF2193
Motif
Other DBs
NCBI-GeneID:
120711559
NCBI-ProteinID:
XP_039853050
LinkDB
All DBs
Position
6K:complement(8082879..8094477)
Genome browser
AA seq
1005 aa
AA seq
DB search
MLSFTCLSVLRSFTLLLCFLTLVIVLADRQDYSHSSDMRVREGSAFKLGFYANLNVQNIA
QEWLVESRRLFYLRTVNNVTNNIYKGTTPLRAGNLQSELSEDHRGLNYPSLRNIREHVSS
KSVVNRHENTELVRHSMINQPVQSVFPVSVVNSSVKQSMPRGPNVGIPLHDISKTEVILE
LNDKVHEVNDKKVKKIVVKKRVSSLPTKASFSKESMEAQKEVAAIYDKVLVVDNIESART
VVQLLTTKYKNFIHACDTEVANIDVKDETPVGHGQVTCFSIYSANSNAQVADFGNGKTSI
WVDVLDGGRDVLMEFVPFFEDPSIKKVWHNYSFDSHVIENHGIKVAGFHADTMHLAHLWD
SSRRTDGGYSLEGLTNDCRVMDTAPEDLPNAGKTSMKTIFGKKKVRKDGSEGKVISVDSV
EKLQREDRELWICYSSLDSMSTLRLYESLKRKLETKVWIFDGCPRGTMYDFYEEYWRPFG
ALLVKMETEGMLVDRGYLSEIEKAAIAEREVAANKFRKWASKYCPDAKYMNVNSDTQIRQ
LLFGGIENRHKSGETWPHSKTFKVLNEESVDAEGKKTSKYRTIKLCSIVEDLKIDMFTPS
GWPSVSGDALRSLAGKIPTKHIYTIDDNEGDEEDTSGSEHSEQEVDESSSYGIAHEAFGG
GKKGKEACNAIAALCEICSIDSLISNFILPLQGDHISCAEACIHCSLNINTETGRLSART
PNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDF
HSRTAMNMYQHIRDAVDEKKVLLEWHPQPGQEEPPAPLLKDAFGAERRKAKMLNFSIAYG
KTAVGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKRQKKLAHEKCEVYTLLGRSRRFPN
LTQFGPGQRGHIERAAINAPVQGSAADVAMCAMLEIERNTRLKELGWRLLLQVHDEVILE
GPTDSAETAKAIVVECMSKPFYGTNILNVDLAVDAKCAKSWYAAK
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgctctcctttacctgtctttcagtacttaggagtttcacgttgcttttatgctttcta
actttggtaatcgttctggctgacaggcaagactattctcatagctcagatatgagagtt
cgagaaggcagcgctttcaagcttggattctatgccaacttaaacgtgcaaaatattgca
caagaatggcttgttgagagcaggaggctgttttatctcagaactgtcaacaatgtcacg
aacaacatctataagggcaccactcctctacgggctgggaacctacaaagtgaactctca
gaagaccacaggggtttaaactacccttccttgcgcaatataagagaacatgtatcatct
aagtcagttgtaaatagacatgaaaacactgaactggtcaggcatagtatgataaatcag
cctgtgcaatcagtgttcccagtaagtgttgttaatagtagtgtcaaacaaagcatgcct
agaggcccaaatgtggggattcctttgcatgacatctctaagacagaggtaattttggag
ctgaatgataaggttcatgaagtcaatgacaaaaaggtcaagaaaattgtagttaaaaaa
agggtttcatctttgccaactaaagcatccttctccaaggaatctatggaagcacagaag
gaagttgctgccatctacgacaaagttttggtagttgacaatatcgagtcagctaggacc
gttgttcaactgcttactacaaagtacaagaactttattcatgcatgtgacacggaggta
gcaaatattgacgttaaagatgagacaccagttggtcatggacaagtaacatgctttagc
atctattcagcaaattctaatgcacaggtcgctgattttggaaatggaaaaacttccatt
tgggttgatgtcctggatggtgggagggatgtcctgatggagtttgttcctttttttgaa
gatccatccatcaagaaggtttggcataactatagctttgatagccatgtcattgagaac
catggaattaaagttgctgggtttcatgctgatacaatgcatcttgcacacctttgggat
tcatcgaggagaactgatggtggatattctcttgaaggacttacaaatgactgtagagtc
atggatactgctccagaggatttacctaatgctggaaagacatcaatgaaaaccatcttt
ggcaagaaaaaagttagaaaggatggatctgaagggaaagtcatatctgttgactcagtc
gaaaagttacaaagggaagacagagagttgtggatttgctattcttcactagattcaatg
agcaccttgaggctttatgagagcttaaaaagaaagcttgaaacaaaggtatggatcttt
gatggttgccccaggggcacaatgtacgatttctatgaagagtattggcgtcccttcggt
gcccttcttgtgaagatggaaacagagggaatgcttgttgatcgtggttacctttcagag
atagaaaaggctgctattgctgaacgagaagtagctgcaaataagtttcggaagtgggca
tctaaatactgtcctgatgccaagtacatgaatgtgaatagcgatactcaaattcgccaa
cttctctttggtggcattgaaaatagacataaatctggtgaaacttggccacacagtaaa
acttttaaagtgctaaatgaagaaagtgtagatgcagagggaaagaagacttcaaagtat
cgtacaatcaaactttgcagtatcgttgaagatctgaaaattgatatgttcacccctagt
ggctggccatcagtcagcggggatgcattgagaagtttggctggtaaaatacctacaaaa
catatttacacaatagacgataatgaaggggatgaagaagatactagtggttcagaacat
tctgagcaggaagtagatgaaagttcgtcatatggaatagcacatgaagcgtttggtgga
ggaaagaagggaaaagaagcatgcaatgcaattgcagctttatgtgaaatatgttctatc
gattcattgatatccaatttcattcttcccttgcagggagatcatatatcttgtgcagag
gcgtgcatccactgttcattaaacatcaatactgagactggacgtttgtcagcacgaacg
ccaaatctacagaaccaacctgcccttgaaaaggataggtataagattcgccaagctttc
gttgcagctccaggaaattctctcattgttgctgattatggtcagctggagctgaggatc
ttagcccaccttactaattgtaaaagcatgttggatgctttcaaggctggtggtgacttc
cattctagaactgctatgaatatgtaccagcatatccgtgatgctgttgatgaaaagaaa
gttcttcttgagtggcaccctcaacctggtcaagaggaacctccggcgcctctattgaag
gatgcttttggtgctgagaggaggaaagctaaaatgcttaatttctcgattgcgtatgga
aaaacagctgttgggctatctcgagattggaaggtatctgttaaggaggcaagggataca
ctcaagctatggtatggagatagaaaagaagtgttagcttggcaaaagaggcaaaagaag
cttgcacacgagaaatgcgaagtttacactttgcttggtcgatcgcgtcgttttcctaac
ttgactcaatttggtcctggtcaacgaggtcatattgagcgtgctgccataaatgcacca
gtgcagggaagtgcagcagatgttgccatgtgtgccatgcttgagatcgaaaggaatacc
cgtcttaaggagcttggttggaggctcctactgcaggtgcatgatgaagtgatactggaa
gggcccacagattctgctgagacggccaaggccatagtggtggagtgtatgtccaaacct
ttctacggaaccaacatcctgaatgttgacctggctgtcgacgccaagtgcgcaaagagc
tggtacgctgccaaatag
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